Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 GMCL1-201ENST00000282570 4191 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB1P09429 GTF2I-215ENST00000614986 4415 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB1P09429 GTF2I-221ENST00000621734 4412 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB1P09429 FUT3-207ENST00000589620 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB1P09429 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC16.43■□□□□ 0.22
HMGB1P09429 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB1P09429 HPSE2-206ENST00000628193 1760 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB1P09429 CDH1-201ENST00000261769 4889 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB1P09429 KRT74-203ENST00000549343 2858 ntTSL 5 BASIC16.43■□□□□ 0.22
HMGB1P09429 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB1P09429 LILRA1-201ENST00000251372 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB1P09429 PRKACB-205ENST00000370688 1905 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB1P09429 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC16.43■□□□□ 0.22
HMGB1P09429 PEG13-201ENST00000631594 5667 ntBASIC16.43■□□□□ 0.22
HMGB1P09429 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB1P09429 GCOM1-214ENST00000587652 2329 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
HMGB1P09429 BCAR1-208ENST00000542031 2846 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
HMGB1P09429 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC16.42■□□□□ 0.22
HMGB1P09429 CLPB-209ENST00000538039 3078 ntAPPRIS ALT1 TSL 2 BASIC16.42■□□□□ 0.22
HMGB1P09429 MEX3B-202ENST00000558133 4333 ntBASIC16.42■□□□□ 0.22
HMGB1P09429 NEK4-207ENST00000535191 2452 ntTSL 2 BASIC16.42■□□□□ 0.22
HMGB1P09429 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
HMGB1P09429 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HMGB1P09429 PIK3R5-219ENST00000616147 4377 ntTSL 5 BASIC16.42■□□□□ 0.22
HMGB1P09429 RBM6-211ENST00000443081 4010 ntTSL 5 BASIC16.42■□□□□ 0.22
HMGB1P09429 SEMA4B-201ENST00000332496 3781 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HMGB1P09429 LARP7-202ENST00000344442 2286 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
HMGB1P09429 CHI3L1-201ENST00000255409 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HMGB1P09429 DHX16-202ENST00000376442 3445 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HMGB1P09429 RIDA-201ENST00000254878 1057 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HMGB1P09429 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
HMGB1P09429 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HMGB1P09429 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
HMGB1P09429 AL583805.1-201ENST00000391389 531 ntBASIC16.42■□□□□ 0.22
HMGB1P09429 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC16.42■□□□□ 0.22
HMGB1P09429 GSTT2-201ENST00000402588 937 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HMGB1P09429 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC16.42■□□□□ 0.22
HMGB1P09429 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC16.42■□□□□ 0.22
HMGB1P09429 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC16.42■□□□□ 0.22
HMGB1P09429 PRKCZ-AS1-202ENST00000444529 622 ntTSL 3 BASIC16.42■□□□□ 0.22
HMGB1P09429 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
HMGB1P09429 C14orf132-201ENST00000553764 562 ntTSL 4 BASIC16.42■□□□□ 0.22
HMGB1P09429 ACTG1P17-201ENST00000558391 1119 ntBASIC16.42■□□□□ 0.22
HMGB1P09429 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC16.42■□□□□ 0.22
HMGB1P09429 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC16.42■□□□□ 0.22
HMGB1P09429 HPX-213ENST00000615166 826 ntTSL 5 BASIC16.42■□□□□ 0.22
HMGB1P09429 MIR6787-201ENST00000616675 61 ntBASIC16.42■□□□□ 0.22
HMGB1P09429 GPR182-203ENST00000622922 591 ntBASIC16.42■□□□□ 0.22
HMGB1P09429 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HMGB1P09429 SH2D7-202ENST00000409568 2162 ntTSL 5 BASIC16.42■□□□□ 0.22
HMGB1P09429 FAM200B-201ENST00000422728 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HMGB1P09429 GRM4-206ENST00000544773 2983 ntTSL 2 BASIC16.42■□□□□ 0.22
HMGB1P09429 NOBOX-201ENST00000467773 2076 ntTSL 5 BASIC16.42■□□□□ 0.22
HMGB1P09429 GLB1L-201ENST00000295759 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HMGB1P09429 EFEMP1-201ENST00000355426 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HMGB1P09429 UMODL1-204ENST00000400427 5442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
HMGB1P09429 PTK7-205ENST00000352931 4023 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HMGB1P09429 RRAGD-201ENST00000359203 4042 ntTSL 2 BASIC16.42■□□□□ 0.22
HMGB1P09429 CAMKK2-204ENST00000392473 2967 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGB1P09429 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
HMGB1P09429 CAPN14-202ENST00000403897 2197 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
HMGB1P09429 CCNE2-201ENST00000308108 2724 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
HMGB1P09429 PARP3-201ENST00000398755 2336 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGB1P09429 PRAME-214ENST00000543184 2758 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGB1P09429 SLC39A8-203ENST00000424970 4032 ntTSL 2 BASIC16.41■□□□□ 0.22
HMGB1P09429 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGB1P09429 FCHO1-221ENST00000597512 2934 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HMGB1P09429 CCDC178-201ENST00000300227 3087 ntAPPRIS P3 TSL 2 BASIC16.41■□□□□ 0.22
HMGB1P09429 DERL3-202ENST00000318109 860 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGB1P09429 SH3BGRL3-202ENST00000319041 768 ntTSL 2 BASIC16.41■□□□□ 0.22
HMGB1P09429 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HMGB1P09429 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGB1P09429 AC106827.1-201ENST00000366454 431 ntBASIC16.41■□□□□ 0.22
HMGB1P09429 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGB1P09429 MIR1307-201ENST00000408840 149 ntBASIC16.41■□□□□ 0.22
HMGB1P09429 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC16.41■□□□□ 0.22
HMGB1P09429 AL807761.2-201ENST00000422849 729 ntBASIC16.41■□□□□ 0.22
HMGB1P09429 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC16.41■□□□□ 0.22
HMGB1P09429 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC16.41■□□□□ 0.22
HMGB1P09429 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC16.41■□□□□ 0.22
HMGB1P09429 RN7SL67P-201ENST00000492147 296 ntBASIC16.41■□□□□ 0.22
HMGB1P09429 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC16.41■□□□□ 0.22
HMGB1P09429 RTN3P1-201ENST00000536295 711 ntBASIC16.41■□□□□ 0.22
HMGB1P09429 PTGR1-209ENST00000538962 1200 ntTSL 2 BASIC16.41■□□□□ 0.22
HMGB1P09429 LINC01543-201ENST00000578367 900 ntTSL 5 BASIC16.41■□□□□ 0.22
HMGB1P09429 SIGLEC18P-201ENST00000602271 909 ntBASIC16.41■□□□□ 0.22
HMGB1P09429 AL049840.2-201ENST00000602722 535 ntBASIC16.41■□□□□ 0.22
HMGB1P09429 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC16.41■□□□□ 0.22
HMGB1P09429 MAP7-204ENST00000454590 3119 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
HMGB1P09429 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC16.41■□□□□ 0.22
HMGB1P09429 HNRNPUL1-204ENST00000392006 3555 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGB1P09429 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGB1P09429 UBA2-201ENST00000246548 4023 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGB1P09429 DAGLB-201ENST00000297056 2897 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGB1P09429 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGB1P09429 FIG4-201ENST00000230124 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGB1P09429 ALAD-201ENST00000409155 3173 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGB1P09429 PPP1R8-202ENST00000311772 2344 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGB1P09429 STRC-205ENST00000450892 5680 ntAPPRIS P2 TSL 5 BASIC16.41■□□□□ 0.22
HMGB1P09429 MCRIP1-207ENST00000574190 2775 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms