Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 TMEM254-213ENST00000613758 2154 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
VPS13CQ709C8 PSAP-202ENST00000394936 2872 ntAPPRIS P2 TSL 1 (best) BASIC11.12□□□□□ -0.63
VPS13CQ709C8 TACC1-208ENST00000520340 1976 ntTSL 5 BASIC11.12□□□□□ -0.63
VPS13CQ709C8 AL512488.1-201ENST00000433544 1671 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
VPS13CQ709C8 ETNPPL-202ENST00000411864 2028 ntAPPRIS ALT1 TSL 1 (best) BASIC11.12□□□□□ -0.63
VPS13CQ709C8 AC009093.1-201ENST00000566070 2099 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
VPS13CQ709C8 MRPL43-202ENST00000318325 2134 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
VPS13CQ709C8 MEAF6-204ENST00000373075 2147 ntAPPRIS P3 TSL 1 (best) BASIC11.12□□□□□ -0.63
VPS13CQ709C8 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
VPS13CQ709C8 CREB5-205ENST00000409603 1944 ntTSL 2 BASIC11.12□□□□□ -0.63
VPS13CQ709C8 AC008080.1-201ENST00000311067 1058 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
VPS13CQ709C8 AC005077.3-201ENST00000449614 213 ntBASIC11.12□□□□□ -0.63
VPS13CQ709C8 YBX1P3-201ENST00000468366 909 ntBASIC11.12□□□□□ -0.63
VPS13CQ709C8 RN7SL477P-201ENST00000488440 286 ntBASIC11.12□□□□□ -0.63
VPS13CQ709C8 BACE1-207ENST00000510630 1236 ntTSL 2 BASIC11.12□□□□□ -0.63
VPS13CQ709C8 AC006273.1-201ENST00000606966 861 ntBASIC11.12□□□□□ -0.63
VPS13CQ709C8 ENSA-208ENST00000369014 2085 ntAPPRIS P4 TSL 1 (best) BASIC11.12□□□□□ -0.63
VPS13CQ709C8 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC11.12□□□□□ -0.63
VPS13CQ709C8 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC11.12□□□□□ -0.63
VPS13CQ709C8 M1AP-201ENST00000290536 2543 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
VPS13CQ709C8 UGGT2-201ENST00000376712 2240 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
VPS13CQ709C8 ATP6V0A1-206ENST00000585525 2679 ntTSL 2 BASIC11.12□□□□□ -0.63
VPS13CQ709C8 BCAR1-208ENST00000542031 2846 ntAPPRIS ALT2 TSL 2 BASIC11.12□□□□□ -0.63
VPS13CQ709C8 ZNF384-201ENST00000319770 3266 ntTSL 2 BASIC11.12□□□□□ -0.63
VPS13CQ709C8 AGAP4-203ENST00000448048 2439 ntAPPRIS P2 TSL 1 (best) BASIC11.12□□□□□ -0.63
VPS13CQ709C8 HFE-205ENST00000352392 653 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
VPS13CQ709C8 KRTAP12-1-201ENST00000391617 588 ntAPPRIS P1 BASIC11.12□□□□□ -0.63
VPS13CQ709C8 CR769775.1-203ENST00000399894 579 ntTSL 3 BASIC11.12□□□□□ -0.63
VPS13CQ709C8 SERF2-204ENST00000402131 586 ntTSL 2 BASIC11.12□□□□□ -0.63
VPS13CQ709C8 AL391903.1-201ENST00000407513 365 ntBASIC11.12□□□□□ -0.63
VPS13CQ709C8 SPRY4-AS1-203ENST00000443800 566 ntTSL 3 BASIC11.12□□□□□ -0.63
VPS13CQ709C8 SMIM14-205ENST00000511809 830 ntTSL 2 BASIC11.12□□□□□ -0.63
VPS13CQ709C8 AC104521.1-201ENST00000598582 279 ntTSL 5 BASIC11.12□□□□□ -0.63
VPS13CQ709C8 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
VPS13CQ709C8 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
VPS13CQ709C8 DHRS12-202ENST00000280056 1324 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
VPS13CQ709C8 CD9-212ENST00000610354 1315 ntTSL 5 BASIC11.12□□□□□ -0.63
VPS13CQ709C8 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
VPS13CQ709C8 BEND3P3-201ENST00000611030 2440 ntBASIC11.12□□□□□ -0.63
VPS13CQ709C8 PNKD-203ENST00000273077 3021 ntAPPRIS P4 TSL 1 (best) BASIC11.12□□□□□ -0.63
VPS13CQ709C8 ABCF3-201ENST00000292808 2453 ntAPPRIS ALT1 TSL 2 BASIC11.12□□□□□ -0.63
VPS13CQ709C8 FAM200A-202ENST00000449309 2480 ntAPPRIS P2 TSL 1 (best) BASIC11.12□□□□□ -0.63
VPS13CQ709C8 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
VPS13CQ709C8 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
VPS13CQ709C8 ZFHX4-AS1-201ENST00000518143 1711 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
VPS13CQ709C8 WHRN-201ENST00000265134 2847 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
VPS13CQ709C8 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
VPS13CQ709C8 ZNF684-201ENST00000372696 1009 ntTSL 3 BASIC11.12□□□□□ -0.63
VPS13CQ709C8 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
VPS13CQ709C8 HNRNPA1P3-201ENST00000440968 551 ntBASIC11.12□□□□□ -0.63
VPS13CQ709C8 CFL1P1-204ENST00000456375 424 ntTSL 3 BASIC11.12□□□□□ -0.63
VPS13CQ709C8 NUP210P2-201ENST00000510577 282 ntBASIC11.12□□□□□ -0.63
VPS13CQ709C8 ROPN1L-AS1-201ENST00000513037 189 ntTSL 2 BASIC11.12□□□□□ -0.63
VPS13CQ709C8 AP003108.1-201ENST00000534856 554 ntTSL 4 BASIC11.12□□□□□ -0.63
VPS13CQ709C8 COX14-204ENST00000550654 580 ntAPPRIS P1 TSL 2 BASIC11.12□□□□□ -0.63
VPS13CQ709C8 AC116552.1-201ENST00000563243 733 ntTSL 3 BASIC11.12□□□□□ -0.63
VPS13CQ709C8 AC005609.1-201ENST00000625195 617 ntTSL 5 BASIC11.12□□□□□ -0.63
VPS13CQ709C8 GTF3A-209ENST00000640289 1098 ntAPPRIS P2 TSL 1 (best) BASIC11.12□□□□□ -0.63
VPS13CQ709C8 MIR100HG-219ENST00000533109 1794 ntTSL 5 BASIC11.11□□□□□ -0.63
VPS13CQ709C8 SUV39H2-201ENST00000313519 3087 ntAPPRIS P3 TSL 1 (best) BASIC11.11□□□□□ -0.63
VPS13CQ709C8 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
VPS13CQ709C8 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
VPS13CQ709C8 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
VPS13CQ709C8 OPN4-201ENST00000241891 2308 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
VPS13CQ709C8 NXPE3-201ENST00000273347 3941 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
VPS13CQ709C8 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC11.11□□□□□ -0.63
VPS13CQ709C8 PAK1-215ENST00000530617 3001 ntTSL 2 BASIC11.11□□□□□ -0.63
VPS13CQ709C8 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC11.11□□□□□ -0.63
VPS13CQ709C8 SULT1A3-201ENST00000338971 1097 ntAPPRIS P2 TSL 1 (best) BASIC11.11□□□□□ -0.63
VPS13CQ709C8 SNORD23-201ENST00000408876 110 ntBASIC11.11□□□□□ -0.63
VPS13CQ709C8 TULP3P1-202ENST00000453253 1291 ntBASIC11.11□□□□□ -0.63
VPS13CQ709C8 AC104117.1-201ENST00000517817 900 ntBASIC11.11□□□□□ -0.63
VPS13CQ709C8 LINC02130-201ENST00000566054 518 ntTSL 2 BASIC11.11□□□□□ -0.63
VPS13CQ709C8 LINC00959-202ENST00000637128 826 ntAPPRIS P1 TSL 5 BASIC11.11□□□□□ -0.63
VPS13CQ709C8 OR2C1-201ENST00000304936 1406 ntAPPRIS P1 BASIC11.11□□□□□ -0.63
VPS13CQ709C8 AC024075.2-201ENST00000598112 1473 ntBASIC11.11□□□□□ -0.63
VPS13CQ709C8 ZSCAN5DP-201ENST00000600684 1488 ntBASIC11.11□□□□□ -0.63
VPS13CQ709C8 TRIML2-207ENST00000512729 1639 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
VPS13CQ709C8 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
VPS13CQ709C8 AL390755.1-201ENST00000623716 2027 ntBASIC11.11□□□□□ -0.63
VPS13CQ709C8 DMTN-220ENST00000523266 2735 ntTSL 5 BASIC11.11□□□□□ -0.63
VPS13CQ709C8 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC11.11□□□□□ -0.63
VPS13CQ709C8 ZFYVE19-215ENST00000570108 1669 ntAPPRIS ALT2 TSL 5 BASIC11.11□□□□□ -0.63
VPS13CQ709C8 PEX11B-203ENST00000537888 1632 ntTSL 2 BASIC11.11□□□□□ -0.63
VPS13CQ709C8 APEX1-201ENST00000216714 1484 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
VPS13CQ709C8 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
VPS13CQ709C8 AC096677.3-201ENST00000413162 387 ntBASIC11.11□□□□□ -0.63
VPS13CQ709C8 RPL13AP5-201ENST00000439189 612 ntBASIC11.11□□□□□ -0.63
VPS13CQ709C8 VEGFA-210ENST00000457104 414 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
VPS13CQ709C8 VEGFA-218ENST00000518689 630 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
VPS13CQ709C8 VEGFA-223ENST00000523125 541 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
VPS13CQ709C8 AC025265.3-201ENST00000550175 468 ntTSL 3 BASIC11.11□□□□□ -0.63
VPS13CQ709C8 MT1L-201ENST00000565768 411 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
VPS13CQ709C8 AL589743.3-201ENST00000604121 517 ntBASIC11.11□□□□□ -0.63
VPS13CQ709C8 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
VPS13CQ709C8 ADCY7-208ENST00000566433 2535 ntTSL 5 BASIC11.11□□□□□ -0.63
VPS13CQ709C8 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC11.11□□□□□ -0.63
VPS13CQ709C8 ALG11-204ENST00000616513 1983 ntTSL 2 BASIC11.11□□□□□ -0.63
VPS13CQ709C8 NKX2-1-AS1-201ENST00000521292 1775 ntTSL 2 BASIC11.11□□□□□ -0.63
VPS13CQ709C8 IKBKG-208ENST00000611176 1654 ntTSL 2 BASIC11.11□□□□□ -0.63
Retrieved 100 of 98,524 protein–RNA pairs in 133.2 ms