Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC17.12■□□□□ 0.33
RC3H1Q5TC82 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RC3H1Q5TC82 ENSA-208ENST00000369014 2085 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
RC3H1Q5TC82 INTS4P1-203ENST00000641008 3683 ntBASIC17.12■□□□□ 0.33
RC3H1Q5TC82 CATSPERD-202ENST00000381624 2516 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RC3H1Q5TC82 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RC3H1Q5TC82 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
RC3H1Q5TC82 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
RC3H1Q5TC82 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC17.12■□□□□ 0.33
RC3H1Q5TC82 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
RC3H1Q5TC82 MCF2L-209ENST00000397036 1544 ntTSL 2 BASIC17.11■□□□□ 0.33
RC3H1Q5TC82 GBAP1-208ENST00000566701 1546 ntBASIC17.11■□□□□ 0.33
RC3H1Q5TC82 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
RC3H1Q5TC82 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RC3H1Q5TC82 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
RC3H1Q5TC82 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC17.11■□□□□ 0.33
RC3H1Q5TC82 LINC01744-201ENST00000457698 2042 ntTSL 2 BASIC17.11■□□□□ 0.33
RC3H1Q5TC82 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RC3H1Q5TC82 NME1-209ENST00000511355 1645 ntTSL 5 BASIC17.11■□□□□ 0.33
RC3H1Q5TC82 AC023509.3-202ENST00000591834 1609 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
RC3H1Q5TC82 ZFYVE19-215ENST00000570108 1669 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
RC3H1Q5TC82 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC17.11■□□□□ 0.33
RC3H1Q5TC82 DPH2-202ENST00000396758 1738 ntTSL 3 BASIC17.11■□□□□ 0.33
RC3H1Q5TC82 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC17.11■□□□□ 0.33
RC3H1Q5TC82 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC17.11■□□□□ 0.33
RC3H1Q5TC82 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC17.11■□□□□ 0.33
RC3H1Q5TC82 NKX2-1-AS1-201ENST00000521292 1775 ntTSL 2 BASIC17.11■□□□□ 0.33
RC3H1Q5TC82 GOLGA8N-205ENST00000569659 1791 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
RC3H1Q5TC82 AC024475.2-201ENST00000312173 879 ntBASIC17.11■□□□□ 0.33
RC3H1Q5TC82 MED27-202ENST00000357028 1281 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RC3H1Q5TC82 KRT8P6-201ENST00000399259 1207 ntBASIC17.11■□□□□ 0.33
RC3H1Q5TC82 IGSF23-201ENST00000402988 989 ntAPPRIS P2 TSL 3 BASIC17.11■□□□□ 0.33
RC3H1Q5TC82 AL357079.1-203ENST00000412378 494 ntTSL 5 BASIC17.11■□□□□ 0.33
RC3H1Q5TC82 GAPDHP29-201ENST00000429913 985 ntBASIC17.11■□□□□ 0.33
RC3H1Q5TC82 AC093106.1-201ENST00000437271 352 ntBASIC17.11■□□□□ 0.33
RC3H1Q5TC82 AC019205.2-201ENST00000442007 1083 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RC3H1Q5TC82 CST7-201ENST00000480798 930 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RC3H1Q5TC82 RN7SL2-201ENST00000490232 300 ntBASIC17.11■□□□□ 0.33
RC3H1Q5TC82 AC140847.2-201ENST00000545923 501 ntTSL 3 BASIC17.11■□□□□ 0.33
RC3H1Q5TC82 AC079336.3-201ENST00000577227 475 ntTSL 3 BASIC17.11■□□□□ 0.33
RC3H1Q5TC82 RN7SL4P-201ENST00000584058 295 ntBASIC17.11■□□□□ 0.33
RC3H1Q5TC82 MXRA7-204ENST00000585519 540 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
RC3H1Q5TC82 AC112220.4-201ENST00000604982 1263 ntBASIC17.11■□□□□ 0.33
RC3H1Q5TC82 AL109954.3-201ENST00000615088 558 ntBASIC17.11■□□□□ 0.33
RC3H1Q5TC82 OR3A1-202ENST00000615105 966 ntBASIC17.11■□□□□ 0.33
RC3H1Q5TC82 AC008993.3-201ENST00000633603 631 ntTSL 5 BASIC17.11■□□□□ 0.33
RC3H1Q5TC82 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RC3H1Q5TC82 OXGR1-204ENST00000543457 1305 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RC3H1Q5TC82 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC17.11■□□□□ 0.33
RC3H1Q5TC82 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RC3H1Q5TC82 AL928654.5-201ENST00000624831 2501 ntBASIC17.11■□□□□ 0.33
RC3H1Q5TC82 LTA-213ENST00000418386 1422 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RC3H1Q5TC82 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RC3H1Q5TC82 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
RC3H1Q5TC82 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RC3H1Q5TC82 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
RC3H1Q5TC82 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RC3H1Q5TC82 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RC3H1Q5TC82 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RC3H1Q5TC82 HOPX-202ENST00000337881 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RC3H1Q5TC82 TRIML2-207ENST00000512729 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RC3H1Q5TC82 AL157832.2-205ENST00000597245 1649 ntBASIC17.1■□□□□ 0.33
RC3H1Q5TC82 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RC3H1Q5TC82 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RC3H1Q5TC82 SP140L-205ENST00000458341 1727 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RC3H1Q5TC82 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC17.1■□□□□ 0.33
RC3H1Q5TC82 AL359878.1-201ENST00000381466 1886 ntTSL 2 BASIC17.1■□□□□ 0.33
RC3H1Q5TC82 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
RC3H1Q5TC82 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
RC3H1Q5TC82 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
RC3H1Q5TC82 TAMM41-201ENST00000273037 1297 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RC3H1Q5TC82 ASPDH-201ENST00000376916 848 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RC3H1Q5TC82 PAX5-203ENST00000377847 996 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RC3H1Q5TC82 KCNMA1-AS1-201ENST00000426234 863 ntTSL 5 BASIC17.1■□□□□ 0.33
RC3H1Q5TC82 MYCBP-203ENST00000494695 750 ntTSL 2 BASIC17.1■□□□□ 0.33
RC3H1Q5TC82 SLC25A51P3-201ENST00000521814 889 ntBASIC17.1■□□□□ 0.33
RC3H1Q5TC82 PAX5-213ENST00000523145 830 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RC3H1Q5TC82 AC100858.2-201ENST00000531948 487 ntTSL 3 BASIC17.1■□□□□ 0.33
RC3H1Q5TC82 MST1L-204ENST00000545160 559 ntTSL 4 BASIC17.1■□□□□ 0.33
RC3H1Q5TC82 LINC02130-201ENST00000566054 518 ntTSL 2 BASIC17.1■□□□□ 0.33
RC3H1Q5TC82 FAM90A28P-201ENST00000596881 489 ntTSL 5 BASIC17.1■□□□□ 0.33
RC3H1Q5TC82 PSME2-217ENST00000615264 874 ntTSL 5 BASIC17.1■□□□□ 0.33
RC3H1Q5TC82 PSME2-218ENST00000630027 185 ntTSL 3 BASIC17.1■□□□□ 0.33
RC3H1Q5TC82 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RC3H1Q5TC82 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RC3H1Q5TC82 LARP4-207ENST00000518561 1578 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RC3H1Q5TC82 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RC3H1Q5TC82 TPO-203ENST00000346956 2923 ntTSL 5 BASIC17.1■□□□□ 0.33
RC3H1Q5TC82 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RC3H1Q5TC82 ZNF143-202ENST00000396597 1954 ntTSL 2 BASIC17.09■□□□□ 0.33
RC3H1Q5TC82 FER1L4-210ENST00000615531 5998 ntBASIC17.09■□□□□ 0.33
RC3H1Q5TC82 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC17.09■□□□□ 0.33
RC3H1Q5TC82 TEX26-AS1-205ENST00000585870 2053 ntTSL 2 BASIC17.09■□□□□ 0.33
RC3H1Q5TC82 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC17.09■□□□□ 0.33
RC3H1Q5TC82 MEAF6-204ENST00000373075 2147 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
RC3H1Q5TC82 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
RC3H1Q5TC82 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RC3H1Q5TC82 AC027601.5-201ENST00000624065 2482 ntBASIC17.09■□□□□ 0.33
RC3H1Q5TC82 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RC3H1Q5TC82 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms