Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
LMO4P61968 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
LMO4P61968 CNMD-203ENST00000448904 1444 ntAPPRIS ALT1 TSL 1 (best) BASIC11.32□□□□□ -0.6
LMO4P61968 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
LMO4P61968 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
LMO4P61968 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
LMO4P61968 DAXX-201ENST00000266000 2606 ntAPPRIS P2 TSL 1 (best) BASIC11.32□□□□□ -0.6
LMO4P61968 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
LMO4P61968 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
LMO4P61968 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
LMO4P61968 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
LMO4P61968 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC11.32□□□□□ -0.6
LMO4P61968 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
LMO4P61968 AAR2-203ENST00000397286 1466 ntTSL 5 BASIC11.32□□□□□ -0.6
LMO4P61968 FAM45BP-202ENST00000592932 1624 ntBASIC11.31□□□□□ -0.6
LMO4P61968 AC099063.4-201ENST00000641099 1602 ntBASIC11.31□□□□□ -0.6
LMO4P61968 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
LMO4P61968 CFAP157-206ENST00000614677 1796 ntAPPRIS ALT2 TSL 2 BASIC11.31□□□□□ -0.6
LMO4P61968 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LMO4P61968 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
LMO4P61968 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LMO4P61968 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC11.31□□□□□ -0.6
LMO4P61968 AC023908.3-201ENST00000564211 3047 ntBASIC11.31□□□□□ -0.6
LMO4P61968 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
LMO4P61968 AC092053.3-201ENST00000641308 4975 ntBASIC11.31□□□□□ -0.6
LMO4P61968 AL513497.1-201ENST00000624273 2083 ntBASIC11.31□□□□□ -0.6
LMO4P61968 KLKP1-203ENST00000600104 1532 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
LMO4P61968 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
LMO4P61968 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
LMO4P61968 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
LMO4P61968 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC11.31□□□□□ -0.6
LMO4P61968 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
LMO4P61968 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC11.31□□□□□ -0.6
LMO4P61968 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LMO4P61968 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LMO4P61968 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC11.31□□□□□ -0.6
LMO4P61968 PCBD1-201ENST00000299299 1006 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LMO4P61968 RNA5SP491-201ENST00000362936 118 ntBASIC11.31□□□□□ -0.6
LMO4P61968 RPL10-202ENST00000369817 1284 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
LMO4P61968 KLK11-203ENST00000391804 930 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
LMO4P61968 CASP8-206ENST00000392258 1060 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
LMO4P61968 OR10N1P-201ENST00000392758 869 ntBASIC11.31□□□□□ -0.6
LMO4P61968 ZNF286A-201ENST00000395893 654 ntTSL 3 BASIC11.31□□□□□ -0.6
LMO4P61968 AL359853.1-202ENST00000415218 544 ntTSL 2 BASIC11.31□□□□□ -0.6
LMO4P61968 CTHRC1-202ENST00000415886 571 ntTSL 2 BASIC11.31□□□□□ -0.6
LMO4P61968 AL929302.1-201ENST00000426556 871 ntBASIC11.31□□□□□ -0.6
LMO4P61968 AC104961.1-201ENST00000427605 771 ntBASIC11.31□□□□□ -0.6
LMO4P61968 AL355482.2-201ENST00000428646 1145 ntTSL 2 BASIC11.31□□□□□ -0.6
LMO4P61968 NRADDP-201ENST00000437305 691 ntBASIC11.31□□□□□ -0.6
LMO4P61968 AL035413.1-201ENST00000437898 507 ntTSL 2 BASIC11.31□□□□□ -0.6
LMO4P61968 AL512288.1-201ENST00000448015 491 ntTSL 5 BASIC11.31□□□□□ -0.6
LMO4P61968 AC069208.1-205ENST00000456299 576 ntTSL 4 BASIC11.31□□□□□ -0.6
LMO4P61968 CASP3-205ENST00000517513 964 ntTSL 5 BASIC11.31□□□□□ -0.6
LMO4P61968 C10orf113-201ENST00000529198 614 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
LMO4P61968 KRT16P3-202ENST00000580113 1012 ntTSL 3 BASIC11.31□□□□□ -0.6
LMO4P61968 KRT16P1-203ENST00000581027 1012 ntTSL 5 BASIC11.31□□□□□ -0.6
LMO4P61968 AC068675.1-201ENST00000588996 561 ntTSL 4 BASIC11.31□□□□□ -0.6
LMO4P61968 FAAP24-203ENST00000589646 836 ntTSL 3 BASIC11.31□□□□□ -0.6
LMO4P61968 ADH1B-207ENST00000639454 1210 ntTSL 5 BASIC11.31□□□□□ -0.6
LMO4P61968 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LMO4P61968 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LMO4P61968 ERICH1-206ENST00000522706 1551 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
LMO4P61968 DDX46-212ENST00000628477 1584 ntTSL 5 BASIC11.31□□□□□ -0.6
LMO4P61968 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LMO4P61968 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC11.31□□□□□ -0.6
LMO4P61968 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LMO4P61968 KRT37-201ENST00000225550 1475 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LMO4P61968 LINC00969-231ENST00000597482 1476 ntTSL 5 BASIC11.31□□□□□ -0.6
LMO4P61968 AC024075.2-201ENST00000598112 1473 ntBASIC11.31□□□□□ -0.6
LMO4P61968 CASP8-212ENST00000432109 1629 ntAPPRIS P4 TSL 5 BASIC11.31□□□□□ -0.6
LMO4P61968 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LMO4P61968 KAT7-204ENST00000454930 1774 ntTSL 2 BASIC11.31□□□□□ -0.6
LMO4P61968 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
LMO4P61968 FAM156A-208ENST00000615092 2098 ntAPPRIS P2 TSL 5 BASIC11.31□□□□□ -0.6
LMO4P61968 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
LMO4P61968 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LMO4P61968 WASF3-202ENST00000361042 4823 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
LMO4P61968 LINC01230-201ENST00000625222 3017 ntBASIC11.3□□□□□ -0.6
LMO4P61968 CLCN4-201ENST00000380829 2418 ntTSL 5 BASIC11.3□□□□□ -0.6
LMO4P61968 PDCD6IPP2-206ENST00000566178 3351 ntTSL 5 BASIC11.3□□□□□ -0.6
LMO4P61968 MED15-204ENST00000406969 3210 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
LMO4P61968 SMARCA4-204ENST00000444061 4938 ntAPPRIS ALT1 TSL 5 BASIC11.3□□□□□ -0.6
LMO4P61968 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
LMO4P61968 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
LMO4P61968 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
LMO4P61968 AC111170.3-201ENST00000624282 2464 ntBASIC11.3□□□□□ -0.6
LMO4P61968 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
LMO4P61968 GSDMA-201ENST00000301659 2164 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
LMO4P61968 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
LMO4P61968 LDB3-207ENST00000542786 1889 ntTSL 2 BASIC11.3□□□□□ -0.6
LMO4P61968 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
LMO4P61968 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
LMO4P61968 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
LMO4P61968 TMEM9B-202ENST00000525069 1433 ntTSL 2 BASIC11.3□□□□□ -0.6
LMO4P61968 CAMP-201ENST00000296435 745 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
LMO4P61968 DHRS7C-201ENST00000330255 1006 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
LMO4P61968 INO80C-202ENST00000334598 974 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
LMO4P61968 SIRPB3P-201ENST00000340424 1216 ntBASIC11.3□□□□□ -0.6
LMO4P61968 CLCC1-202ENST00000348264 1124 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
LMO4P61968 PDLIM5-203ENST00000359265 1189 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms