Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC13.21□□□□□ -0.29
SOX3P41225 AC093752.3-201ENST00000567343 901 ntBASIC13.21□□□□□ -0.29
SOX3P41225 AC026803.1-201ENST00000569130 274 ntBASIC13.21□□□□□ -0.29
SOX3P41225 PHBP15-201ENST00000574228 665 ntBASIC13.21□□□□□ -0.29
SOX3P41225 MIR3907-201ENST00000579424 151 ntBASIC13.21□□□□□ -0.29
SOX3P41225 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC13.21□□□□□ -0.29
SOX3P41225 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC13.21□□□□□ -0.29
SOX3P41225 LIMD1-202ENST00000440097 2773 ntTSL 5 BASIC13.21□□□□□ -0.29
SOX3P41225 PCDHGB7-202ENST00000612073 2785 ntAPPRIS ALT2 BASIC13.21□□□□□ -0.29
SOX3P41225 ENG-202ENST00000373203 3048 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
SOX3P41225 SGMS1-202ENST00000361781 3744 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
SOX3P41225 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
SOX3P41225 NGEF-201ENST00000264051 3215 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
SOX3P41225 RIC1-204ENST00000418622 6658 ntTSL 5 BASIC13.21□□□□□ -0.29
SOX3P41225 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC13.21□□□□□ -0.29
SOX3P41225 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
SOX3P41225 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
SOX3P41225 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
SOX3P41225 ICOSLG-202ENST00000400377 2907 ntTSL 2 BASIC13.21□□□□□ -0.3
SOX3P41225 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
SOX3P41225 MYO1C-218ENST00000575158 4804 ntAPPRIS P3 TSL 5 BASIC13.21□□□□□ -0.3
SOX3P41225 ELN-222ENST00000458204 3147 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
SOX3P41225 SPECC1L-ADORA2A-201ENST00000358654 6204 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.3
SOX3P41225 CCT8L1P-201ENST00000465400 1674 ntBASIC13.21□□□□□ -0.3
SOX3P41225 RCAN3-207ENST00000538532 2640 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
SOX3P41225 PRKAR2A-202ENST00000296446 3318 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
SOX3P41225 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC13.21□□□□□ -0.3
SOX3P41225 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
SOX3P41225 TSPEAR-AS1-202ENST00000451035 2108 ntTSL 5 BASIC13.21□□□□□ -0.3
SOX3P41225 FES-201ENST00000328850 2829 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
SOX3P41225 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
SOX3P41225 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC13.21□□□□□ -0.3
SOX3P41225 NAP1L2-201ENST00000373517 2550 ntAPPRIS P1 BASIC13.21□□□□□ -0.3
SOX3P41225 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
SOX3P41225 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC13.2□□□□□ -0.3
SOX3P41225 DCUN1D4-201ENST00000334635 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SOX3P41225 C16orf82-201ENST00000418886 2268 ntAPPRIS ALT2 BASIC13.2□□□□□ -0.3
SOX3P41225 CEACAM20-204ENST00000617951 2034 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
SOX3P41225 MYOM3-201ENST00000338909 2693 ntTSL 2 BASIC13.2□□□□□ -0.3
SOX3P41225 PRKCB-201ENST00000303531 7969 ntAPPRIS P4 TSL 1 (best) BASIC13.2□□□□□ -0.3
SOX3P41225 SERTAD2-201ENST00000313349 5549 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SOX3P41225 PNPLA6-201ENST00000221249 4617 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SOX3P41225 NLRX1-201ENST00000292199 3744 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SOX3P41225 TIPARP-201ENST00000295924 4109 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SOX3P41225 PPP4R3B-205ENST00000616288 4310 ntAPPRIS ALT1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SOX3P41225 COL18A1-AS1-201ENST00000397787 3425 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
SOX3P41225 VRK3-201ENST00000316763 1938 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
SOX3P41225 JAKMIP3-201ENST00000298622 6626 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
SOX3P41225 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SOX3P41225 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
SOX3P41225 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC13.2□□□□□ -0.3
SOX3P41225 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
SOX3P41225 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC13.2□□□□□ -0.3
SOX3P41225 BANF1P3-201ENST00000412556 261 ntBASIC13.2□□□□□ -0.3
SOX3P41225 PARVG-202ENST00000415224 999 ntTSL 2 BASIC13.2□□□□□ -0.3
SOX3P41225 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC13.2□□□□□ -0.3
SOX3P41225 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC13.2□□□□□ -0.3
SOX3P41225 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC13.2□□□□□ -0.3
SOX3P41225 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC13.2□□□□□ -0.3
SOX3P41225 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC13.2□□□□□ -0.3
SOX3P41225 RN7SL67P-201ENST00000492147 296 ntBASIC13.2□□□□□ -0.3
SOX3P41225 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC13.2□□□□□ -0.3
SOX3P41225 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC13.2□□□□□ -0.3
SOX3P41225 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC13.2□□□□□ -0.3
SOX3P41225 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC13.2□□□□□ -0.3
SOX3P41225 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC13.2□□□□□ -0.3
SOX3P41225 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
SOX3P41225 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC13.2□□□□□ -0.3
SOX3P41225 AC006453.1-201ENST00000636037 1257 ntBASIC13.2□□□□□ -0.3
SOX3P41225 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC13.2□□□□□ -0.3
SOX3P41225 SYNPR-209ENST00000478300 2709 ntAPPRIS P4 TSL 1 (best) BASIC13.2□□□□□ -0.3
SOX3P41225 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC13.2□□□□□ -0.3
SOX3P41225 MKS1-201ENST00000313863 2091 ntTSL 5 BASIC13.2□□□□□ -0.3
SOX3P41225 DOCK4-206ENST00000437633 6212 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
SOX3P41225 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SOX3P41225 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SOX3P41225 AAR2-202ENST00000373932 2689 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SOX3P41225 PANX2-202ENST00000395842 3051 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
SOX3P41225 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SOX3P41225 ITGB4-202ENST00000449880 5689 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
SOX3P41225 SVIL-AS1-204ENST00000427063 2025 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
SOX3P41225 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC13.2□□□□□ -0.3
SOX3P41225 POLM-201ENST00000242248 2631 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SOX3P41225 KANK2-205ENST00000589359 3048 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
SOX3P41225 ZNF341-202ENST00000375200 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
SOX3P41225 GPRC5B-209ENST00000569479 2984 ntAPPRIS P2 TSL 5 BASIC13.2□□□□□ -0.3
SOX3P41225 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
SOX3P41225 FAM90A2P-201ENST00000511144 1395 ntBASIC13.2□□□□□ -0.3
SOX3P41225 FAM90A25P-201ENST00000528404 1395 ntBASIC13.2□□□□□ -0.3
SOX3P41225 PBRM1-204ENST00000394830 5071 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
SOX3P41225 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.3
SOX3P41225 BORCS5-202ENST00000314565 4840 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SOX3P41225 RNF216-202ENST00000389902 3293 ntAPPRIS P4 TSL 1 (best) BASIC13.19□□□□□ -0.3
SOX3P41225 AC004846.1-201ENST00000554614 3050 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
SOX3P41225 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC13.19□□□□□ -0.3
SOX3P41225 GAB2-202ENST00000361507 6092 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SOX3P41225 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC13.19□□□□□ -0.3
SOX3P41225 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
SOX3P41225 USP49-201ENST00000373006 3177 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
SOX3P41225 CLCN4-201ENST00000380829 2418 ntTSL 5 BASIC13.19□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms