Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC005777.1-201ENST00000588332 187 ntBASIC12.21□□□□□ -0.45
COL8A1P27658 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC12.21□□□□□ -0.45
COL8A1P27658 ZNF724-202ENST00000597037 780 ntTSL 2 BASIC12.21□□□□□ -0.45
COL8A1P27658 AL451064.1-201ENST00000607718 471 ntBASIC12.21□□□□□ -0.45
COL8A1P27658 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
COL8A1P27658 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
COL8A1P27658 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
COL8A1P27658 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC12.21□□□□□ -0.46
COL8A1P27658 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
COL8A1P27658 MTMR9-201ENST00000221086 7481 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
COL8A1P27658 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
COL8A1P27658 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
COL8A1P27658 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.46
COL8A1P27658 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
COL8A1P27658 RER1-203ENST00000378513 3000 ntTSL 3 BASIC12.21□□□□□ -0.46
COL8A1P27658 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.46
COL8A1P27658 TET3-201ENST00000305799 5174 ntTSL 5 BASIC12.21□□□□□ -0.46
COL8A1P27658 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC12.2□□□□□ -0.46
COL8A1P27658 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC12.2□□□□□ -0.46
COL8A1P27658 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
COL8A1P27658 CNMD-203ENST00000448904 1444 ntAPPRIS ALT1 TSL 1 (best) BASIC12.2□□□□□ -0.46
COL8A1P27658 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
COL8A1P27658 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
COL8A1P27658 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC12.2□□□□□ -0.46
COL8A1P27658 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC12.2□□□□□ -0.46
COL8A1P27658 HLA-DMB-258ENST00000418107 1397 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
COL8A1P27658 AC026786.1-201ENST00000540096 1374 ntAPPRIS P1 TSL 2 BASIC12.2□□□□□ -0.46
COL8A1P27658 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC12.2□□□□□ -0.46
COL8A1P27658 MROH2A-201ENST00000389758 5355 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
COL8A1P27658 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC12.2□□□□□ -0.46
COL8A1P27658 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
COL8A1P27658 ERP29-202ENST00000455836 1333 ntTSL 2 BASIC12.2□□□□□ -0.46
COL8A1P27658 DAO-208ENST00000551281 1345 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
COL8A1P27658 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
COL8A1P27658 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
COL8A1P27658 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
COL8A1P27658 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC12.2□□□□□ -0.46
COL8A1P27658 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
COL8A1P27658 AC026748.1-201ENST00000624349 3251 ntBASIC12.2□□□□□ -0.46
COL8A1P27658 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
COL8A1P27658 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC12.2□□□□□ -0.46
COL8A1P27658 AC015688.4-201ENST00000580780 1647 ntBASIC12.2□□□□□ -0.46
COL8A1P27658 BLVRA-201ENST00000265523 1071 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
COL8A1P27658 MIR339-201ENST00000362153 94 ntBASIC12.2□□□□□ -0.46
COL8A1P27658 VASH2-205ENST00000366967 1206 ntTSL 2 BASIC12.2□□□□□ -0.46
COL8A1P27658 AIG1-203ENST00000367596 559 ntTSL 2 BASIC12.2□□□□□ -0.46
COL8A1P27658 PDE4DIP-202ENST00000369347 1137 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
COL8A1P27658 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
COL8A1P27658 ZCCHC6-203ENST00000375948 958 ntTSL 2 BASIC12.2□□□□□ -0.46
COL8A1P27658 AC015691.1-201ENST00000394793 535 ntTSL 3 BASIC12.2□□□□□ -0.46
COL8A1P27658 TISP43-202ENST00000409982 1039 ntAPPRIS P5 TSL 1 (best) BASIC12.2□□□□□ -0.46
COL8A1P27658 LINP1-201ENST00000417112 917 ntTSL 2 BASIC12.2□□□□□ -0.46
COL8A1P27658 BUD23-204ENST00000423497 1219 ntTSL 5 BASIC12.2□□□□□ -0.46
COL8A1P27658 EIF2S2P3-201ENST00000428356 999 ntBASIC12.2□□□□□ -0.46
COL8A1P27658 ELOCP6-201ENST00000429066 328 ntBASIC12.2□□□□□ -0.46
COL8A1P27658 NALT1-202ENST00000450304 437 ntTSL 3 BASIC12.2□□□□□ -0.46
COL8A1P27658 CMPK1-204ENST00000450808 950 ntTSL 2 BASIC12.2□□□□□ -0.46
COL8A1P27658 CLDN25-201ENST00000453129 754 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
COL8A1P27658 ELOCP12-201ENST00000458706 328 ntBASIC12.2□□□□□ -0.46
COL8A1P27658 RN7SL69P-201ENST00000468423 272 ntBASIC12.2□□□□□ -0.46
COL8A1P27658 AC104629.1-201ENST00000494226 508 ntBASIC12.2□□□□□ -0.46
COL8A1P27658 AC099328.1-201ENST00000498809 1030 ntBASIC12.2□□□□□ -0.46
COL8A1P27658 SPRY4-AS1-206ENST00000515288 539 ntTSL 2 BASIC12.2□□□□□ -0.46
COL8A1P27658 AP003043.1-201ENST00000527804 547 ntTSL 4 BASIC12.2□□□□□ -0.46
COL8A1P27658 AL513165.2-203ENST00000537239 717 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
COL8A1P27658 AC092131.1-201ENST00000564046 548 ntTSL 4 BASIC12.2□□□□□ -0.46
COL8A1P27658 CLPP-205ENST00000596605 646 ntTSL 2 BASIC12.2□□□□□ -0.46
COL8A1P27658 FXYD3-206ENST00000603524 742 ntTSL 3 BASIC12.2□□□□□ -0.46
COL8A1P27658 FXYD3-211ENST00000604804 564 ntTSL 4 BASIC12.2□□□□□ -0.46
COL8A1P27658 AC090004.1-201ENST00000608606 653 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
COL8A1P27658 Metazoa_SRP.156-201ENST00000622344 262 ntBASIC12.2□□□□□ -0.46
COL8A1P27658 OR2T11-201ENST00000625105 1072 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
COL8A1P27658 AL807740.1-201ENST00000636971 567 ntTSL 4 BASIC12.2□□□□□ -0.46
COL8A1P27658 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
COL8A1P27658 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
COL8A1P27658 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC12.2□□□□□ -0.46
COL8A1P27658 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC12.2□□□□□ -0.46
COL8A1P27658 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
COL8A1P27658 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
COL8A1P27658 HTD2-205ENST00000477305 1531 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
COL8A1P27658 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
COL8A1P27658 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
COL8A1P27658 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
COL8A1P27658 STAM2-201ENST00000263904 5701 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
COL8A1P27658 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
COL8A1P27658 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
COL8A1P27658 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
COL8A1P27658 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
COL8A1P27658 TUBAL3-201ENST00000380419 1798 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
COL8A1P27658 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC12.2□□□□□ -0.46
COL8A1P27658 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
COL8A1P27658 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC12.2□□□□□ -0.46
COL8A1P27658 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC12.19□□□□□ -0.46
COL8A1P27658 AC040160.2-201ENST00000623816 1675 ntBASIC12.19□□□□□ -0.46
COL8A1P27658 L2HGDH-201ENST00000261699 1377 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
COL8A1P27658 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
COL8A1P27658 RPAIN-202ENST00000381208 1394 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
COL8A1P27658 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
COL8A1P27658 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
COL8A1P27658 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms