Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 NRDC-202ENST00000354831 3895 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
PCNAP12004 SLC12A6-206ENST00000558589 3866 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
PCNAP12004 DLGAP1-205ENST00000400150 5332 ntTSL 5 BASIC13.69□□□□□ -0.22
PCNAP12004 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC13.69□□□□□ -0.22
PCNAP12004 AC073957.3-201ENST00000609998 6758 ntBASIC13.69□□□□□ -0.22
PCNAP12004 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
PCNAP12004 NPPA-201ENST00000376476 728 ntTSL 3 BASIC13.69□□□□□ -0.22
PCNAP12004 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
PCNAP12004 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC13.69□□□□□ -0.22
PCNAP12004 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC13.69□□□□□ -0.22
PCNAP12004 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
PCNAP12004 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC13.69□□□□□ -0.22
PCNAP12004 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC13.69□□□□□ -0.22
PCNAP12004 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC13.69□□□□□ -0.22
PCNAP12004 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
PCNAP12004 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC13.69□□□□□ -0.22
PCNAP12004 AL118558.3-201ENST00000607414 1079 ntBASIC13.69□□□□□ -0.22
PCNAP12004 AL157813.1-201ENST00000612996 587 ntBASIC13.69□□□□□ -0.22
PCNAP12004 AL008638.5-201ENST00000623814 1298 ntBASIC13.69□□□□□ -0.22
PCNAP12004 OS9-218ENST00000551035 2246 ntTSL 2 BASIC13.69□□□□□ -0.22
PCNAP12004 CACNA1G-233ENST00000515765 6981 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
PCNAP12004 SUGP2-203ENST00000452918 6176 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
PCNAP12004 ADAM19-203ENST00000517905 3312 ntTSL 5 BASIC13.69□□□□□ -0.22
PCNAP12004 CACNA1G-214ENST00000505165 6633 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
PCNAP12004 CACNA1G-220ENST00000507896 6600 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
PCNAP12004 SLC29A4-201ENST00000297195 2839 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
PCNAP12004 CARHSP1-217ENST00000611932 2833 ntAPPRIS P1 TSL 3 BASIC13.69□□□□□ -0.22
PCNAP12004 LRRC8A-203ENST00000372600 4355 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
PCNAP12004 MTSS1-216ENST00000524090 2166 ntTSL 2 BASIC13.69□□□□□ -0.22
PCNAP12004 WAPL-206ENST00000618527 6152 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
PCNAP12004 PRDM15-207ENST00000447207 4928 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
PCNAP12004 RBL1-202ENST00000373664 5684 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
PCNAP12004 LIX1L-201ENST00000604000 3975 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
PCNAP12004 NAP1L1-201ENST00000261182 4441 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
PCNAP12004 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
PCNAP12004 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC13.69□□□□□ -0.22
PCNAP12004 FOXP3-204ENST00000455775 2448 ntTSL 5 BASIC13.69□□□□□ -0.22
PCNAP12004 SLC22A2-202ENST00000366953 2597 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
PCNAP12004 ITGB2-205ENST00000397850 3178 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
PCNAP12004 MYLK-202ENST00000354792 7531 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
PCNAP12004 KIF1A-213ENST00000498729 9221 ntTSL 5 BASIC13.68□□□□□ -0.22
PCNAP12004 NFE2L1-218ENST00000583378 2051 ntTSL 5 BASIC13.68□□□□□ -0.22
PCNAP12004 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC13.68□□□□□ -0.22
PCNAP12004 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
PCNAP12004 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
PCNAP12004 HAL-202ENST00000538703 2637 ntTSL 2 BASIC13.68□□□□□ -0.22
PCNAP12004 NAA15-201ENST00000296543 6222 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
PCNAP12004 FAM224A-201ENST00000419557 2031 ntTSL 2 BASIC13.68□□□□□ -0.22
PCNAP12004 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC13.68□□□□□ -0.22
PCNAP12004 AHI1-201ENST00000265602 4335 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
PCNAP12004 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC13.68□□□□□ -0.22
PCNAP12004 ENO2-201ENST00000229277 2423 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
PCNAP12004 DYRK1B-202ENST00000348817 2448 ntTSL 5 BASIC13.68□□□□□ -0.22
PCNAP12004 ENDOV-207ENST00000518907 2418 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
PCNAP12004 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
PCNAP12004 CDH16-201ENST00000299752 2954 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
PCNAP12004 HNRNPA1P32-201ENST00000396326 963 ntBASIC13.68□□□□□ -0.22
PCNAP12004 SKA1-202ENST00000398452 979 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
PCNAP12004 NFATC2-203ENST00000414705 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
PCNAP12004 TSPY25P-201ENST00000429463 745 ntBASIC13.68□□□□□ -0.22
PCNAP12004 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC13.68□□□□□ -0.22
PCNAP12004 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC13.68□□□□□ -0.22
PCNAP12004 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC13.68□□□□□ -0.22
PCNAP12004 RCC2P8-201ENST00000502779 1035 ntBASIC13.68□□□□□ -0.22
PCNAP12004 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC13.68□□□□□ -0.22
PCNAP12004 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC13.68□□□□□ -0.22
PCNAP12004 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC13.68□□□□□ -0.22
PCNAP12004 AL132994.2-201ENST00000603120 687 ntBASIC13.68□□□□□ -0.22
PCNAP12004 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC13.68□□□□□ -0.22
PCNAP12004 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC13.68□□□□□ -0.22
PCNAP12004 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC13.68□□□□□ -0.22
PCNAP12004 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC13.68□□□□□ -0.22
PCNAP12004 PCGF2-203ENST00000616129 1534 ntTSL 5 BASIC13.68□□□□□ -0.22
PCNAP12004 PAAF1-201ENST00000310571 4994 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
PCNAP12004 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
PCNAP12004 SMYD4-201ENST00000305513 4384 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
PCNAP12004 LINC02048-201ENST00000440556 1771 ntTSL 5 BASIC13.68□□□□□ -0.22
PCNAP12004 DNM3-201ENST00000355305 3280 ntTSL 5 BASIC13.68□□□□□ -0.22
PCNAP12004 GLB1L-201ENST00000295759 2745 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
PCNAP12004 AXL-203ENST00000593513 2557 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
PCNAP12004 CEACAM20-204ENST00000617951 2034 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
PCNAP12004 CACNA1C-231ENST00000616390 2833 ntTSL 2 BASIC13.68□□□□□ -0.22
PCNAP12004 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
PCNAP12004 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC13.67□□□□□ -0.22
PCNAP12004 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC13.67□□□□□ -0.22
PCNAP12004 PTPRH-202ENST00000376350 3877 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
PCNAP12004 PRPF40B-209ENST00000548825 3307 ntAPPRIS P2 TSL 5 BASIC13.67□□□□□ -0.22
PCNAP12004 GOLGA7B-203ENST00000596005 6378 ntTSL 2 BASIC13.67□□□□□ -0.22
PCNAP12004 SDF2-201ENST00000247020 1568 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
PCNAP12004 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC13.67□□□□□ -0.22
PCNAP12004 STRIP2-202ENST00000435494 2866 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
PCNAP12004 PTPRVP-205ENST00000641549 5067 ntBASIC13.67□□□□□ -0.22
PCNAP12004 ZNF778-202ENST00000433976 3608 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
PCNAP12004 CTCFL-208ENST00000432255 2955 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
PCNAP12004 OSBP2-219ENST00000535268 3248 ntTSL 2 BASIC13.67□□□□□ -0.22
PCNAP12004 DLGAP1-201ENST00000315677 6683 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
PCNAP12004 HNRNPDL-207ENST00000614627 3968 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
PCNAP12004 ENTPD4-202ENST00000358689 5861 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
PCNAP12004 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
PCNAP12004 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 74.8 ms