Protein–RNA interactions for Protein: Q9Y2P8

RCL1, RNA 3'-terminal phosphate cyclase-like protein, humanhuman

Known RBP Predictions only

Length 373 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RCL1Q9Y2P8 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
RCL1Q9Y2P8 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
RCL1Q9Y2P8 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RCL1Q9Y2P8 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RCL1Q9Y2P8 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RCL1Q9Y2P8 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
RCL1Q9Y2P8 BID-212ENST00000614949 1988 ntTSL 5 BASIC18.28■□□□□ 0.52
RCL1Q9Y2P8 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC18.28■□□□□ 0.52
RCL1Q9Y2P8 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RCL1Q9Y2P8 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
RCL1Q9Y2P8 SLC25A24-204ENST00000569674 2357 ntBASIC18.27■□□□□ 0.52
RCL1Q9Y2P8 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC18.27■□□□□ 0.52
RCL1Q9Y2P8 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
RCL1Q9Y2P8 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
RCL1Q9Y2P8 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
RCL1Q9Y2P8 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
RCL1Q9Y2P8 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
RCL1Q9Y2P8 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
RCL1Q9Y2P8 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
RCL1Q9Y2P8 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
RCL1Q9Y2P8 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
RCL1Q9Y2P8 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
RCL1Q9Y2P8 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
RCL1Q9Y2P8 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
RCL1Q9Y2P8 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC18.26■□□□□ 0.51
RCL1Q9Y2P8 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RCL1Q9Y2P8 AC016575.1-201ENST00000607026 382 ntBASIC18.26■□□□□ 0.51
RCL1Q9Y2P8 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC18.26■□□□□ 0.51
RCL1Q9Y2P8 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
RCL1Q9Y2P8 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC18.26■□□□□ 0.51
RCL1Q9Y2P8 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
RCL1Q9Y2P8 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RCL1Q9Y2P8 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
RCL1Q9Y2P8 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC18.25■□□□□ 0.51
RCL1Q9Y2P8 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
RCL1Q9Y2P8 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
RCL1Q9Y2P8 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
RCL1Q9Y2P8 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
RCL1Q9Y2P8 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
RCL1Q9Y2P8 AC026202.3-201ENST00000600805 1127 ntBASIC18.25■□□□□ 0.51
RCL1Q9Y2P8 AC007029.1-201ENST00000604183 313 ntBASIC18.25■□□□□ 0.51
RCL1Q9Y2P8 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
RCL1Q9Y2P8 C11orf96-202ENST00000528572 1834 ntBASIC18.25■□□□□ 0.51
RCL1Q9Y2P8 AC092053.2-201ENST00000640557 1818 ntBASIC18.25■□□□□ 0.51
RCL1Q9Y2P8 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
RCL1Q9Y2P8 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
RCL1Q9Y2P8 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
RCL1Q9Y2P8 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
RCL1Q9Y2P8 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RCL1Q9Y2P8 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RCL1Q9Y2P8 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
RCL1Q9Y2P8 AC139530.1-201ENST00000575312 1977 ntBASIC18.24■□□□□ 0.51
RCL1Q9Y2P8 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RCL1Q9Y2P8 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
RCL1Q9Y2P8 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RCL1Q9Y2P8 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
RCL1Q9Y2P8 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC18.24■□□□□ 0.51
RCL1Q9Y2P8 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
RCL1Q9Y2P8 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC18.24■□□□□ 0.51
RCL1Q9Y2P8 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC18.24■□□□□ 0.51
RCL1Q9Y2P8 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RCL1Q9Y2P8 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
RCL1Q9Y2P8 EI24-204ENST00000527235 1625 ntTSL 5 BASIC18.23■□□□□ 0.51
RCL1Q9Y2P8 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
RCL1Q9Y2P8 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RCL1Q9Y2P8 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RCL1Q9Y2P8 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC18.23■□□□□ 0.51
RCL1Q9Y2P8 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RCL1Q9Y2P8 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
RCL1Q9Y2P8 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RCL1Q9Y2P8 GFER-205ENST00000569451 517 ntTSL 5 BASIC18.23■□□□□ 0.51
RCL1Q9Y2P8 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
RCL1Q9Y2P8 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC18.23■□□□□ 0.51
RCL1Q9Y2P8 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
RCL1Q9Y2P8 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
RCL1Q9Y2P8 AL022069.1-201ENST00000568025 1636 ntBASIC18.23■□□□□ 0.51
RCL1Q9Y2P8 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC18.23■□□□□ 0.51
RCL1Q9Y2P8 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
RCL1Q9Y2P8 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
RCL1Q9Y2P8 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC18.23■□□□□ 0.51
RCL1Q9Y2P8 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC18.23■□□□□ 0.51
RCL1Q9Y2P8 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RCL1Q9Y2P8 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RCL1Q9Y2P8 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RCL1Q9Y2P8 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RCL1Q9Y2P8 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
RCL1Q9Y2P8 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RCL1Q9Y2P8 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RCL1Q9Y2P8 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
RCL1Q9Y2P8 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
RCL1Q9Y2P8 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
RCL1Q9Y2P8 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
RCL1Q9Y2P8 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
RCL1Q9Y2P8 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
RCL1Q9Y2P8 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
RCL1Q9Y2P8 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
RCL1Q9Y2P8 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
RCL1Q9Y2P8 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
RCL1Q9Y2P8 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
RCL1Q9Y2P8 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 10.3 ms