Protein–RNA interactions for Protein: Q9Y2P8

RCL1, RNA 3'-terminal phosphate cyclase-like protein, humanhuman

Known RBP Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RCL1Q9Y2P8 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
RCL1Q9Y2P8 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
RCL1Q9Y2P8 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RCL1Q9Y2P8 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RCL1Q9Y2P8 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RCL1Q9Y2P8 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
RCL1Q9Y2P8 BID-212ENST00000614949 1988 ntTSL 5 BASIC18.28■□□□□ 0.52
RCL1Q9Y2P8 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC18.28■□□□□ 0.52
RCL1Q9Y2P8 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RCL1Q9Y2P8 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
RCL1Q9Y2P8 SLC25A24-204ENST00000569674 2357 ntBASIC18.27■□□□□ 0.52
RCL1Q9Y2P8 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC18.27■□□□□ 0.52
RCL1Q9Y2P8 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
RCL1Q9Y2P8 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
RCL1Q9Y2P8 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
RCL1Q9Y2P8 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
RCL1Q9Y2P8 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
RCL1Q9Y2P8 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
RCL1Q9Y2P8 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
RCL1Q9Y2P8 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
RCL1Q9Y2P8 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
RCL1Q9Y2P8 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
RCL1Q9Y2P8 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
RCL1Q9Y2P8 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
RCL1Q9Y2P8 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC18.26■□□□□ 0.51
RCL1Q9Y2P8 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RCL1Q9Y2P8 AC016575.1-201ENST00000607026 382 ntBASIC18.26■□□□□ 0.51
RCL1Q9Y2P8 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC18.26■□□□□ 0.51
RCL1Q9Y2P8 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
RCL1Q9Y2P8 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC18.26■□□□□ 0.51
RCL1Q9Y2P8 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
RCL1Q9Y2P8 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RCL1Q9Y2P8 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
RCL1Q9Y2P8 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC18.25■□□□□ 0.51
RCL1Q9Y2P8 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
RCL1Q9Y2P8 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
RCL1Q9Y2P8 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
RCL1Q9Y2P8 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
RCL1Q9Y2P8 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
RCL1Q9Y2P8 AC026202.3-201ENST00000600805 1127 ntBASIC18.25■□□□□ 0.51
RCL1Q9Y2P8 AC007029.1-201ENST00000604183 313 ntBASIC18.25■□□□□ 0.51
RCL1Q9Y2P8 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
RCL1Q9Y2P8 C11orf96-202ENST00000528572 1834 ntBASIC18.25■□□□□ 0.51
RCL1Q9Y2P8 AC092053.2-201ENST00000640557 1818 ntBASIC18.25■□□□□ 0.51
RCL1Q9Y2P8 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
RCL1Q9Y2P8 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
RCL1Q9Y2P8 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
RCL1Q9Y2P8 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
RCL1Q9Y2P8 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RCL1Q9Y2P8 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RCL1Q9Y2P8 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
RCL1Q9Y2P8 AC139530.1-201ENST00000575312 1977 ntBASIC18.24■□□□□ 0.51
RCL1Q9Y2P8 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RCL1Q9Y2P8 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
RCL1Q9Y2P8 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RCL1Q9Y2P8 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
RCL1Q9Y2P8 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC18.24■□□□□ 0.51
RCL1Q9Y2P8 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
RCL1Q9Y2P8 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC18.24■□□□□ 0.51
RCL1Q9Y2P8 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC18.24■□□□□ 0.51
RCL1Q9Y2P8 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RCL1Q9Y2P8 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
RCL1Q9Y2P8 EI24-204ENST00000527235 1625 ntTSL 5 BASIC18.23■□□□□ 0.51
RCL1Q9Y2P8 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
RCL1Q9Y2P8 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RCL1Q9Y2P8 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RCL1Q9Y2P8 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC18.23■□□□□ 0.51
RCL1Q9Y2P8 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RCL1Q9Y2P8 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
RCL1Q9Y2P8 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RCL1Q9Y2P8 GFER-205ENST00000569451 517 ntTSL 5 BASIC18.23■□□□□ 0.51
RCL1Q9Y2P8 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
RCL1Q9Y2P8 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC18.23■□□□□ 0.51
RCL1Q9Y2P8 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
RCL1Q9Y2P8 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
RCL1Q9Y2P8 AL022069.1-201ENST00000568025 1636 ntBASIC18.23■□□□□ 0.51
RCL1Q9Y2P8 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC18.23■□□□□ 0.51
RCL1Q9Y2P8 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
RCL1Q9Y2P8 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
RCL1Q9Y2P8 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC18.23■□□□□ 0.51
RCL1Q9Y2P8 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC18.23■□□□□ 0.51
RCL1Q9Y2P8 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RCL1Q9Y2P8 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RCL1Q9Y2P8 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RCL1Q9Y2P8 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RCL1Q9Y2P8 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
RCL1Q9Y2P8 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RCL1Q9Y2P8 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RCL1Q9Y2P8 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
RCL1Q9Y2P8 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
RCL1Q9Y2P8 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
RCL1Q9Y2P8 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
RCL1Q9Y2P8 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
RCL1Q9Y2P8 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
RCL1Q9Y2P8 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
RCL1Q9Y2P8 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
RCL1Q9Y2P8 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
RCL1Q9Y2P8 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
RCL1Q9Y2P8 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
RCL1Q9Y2P8 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 10.3 ms