Protein–RNA interactions for Protein: Q9P0L0

VAPA, Vesicle-associated membrane protein-associated protein A, humanhuman

Predictions only

Length 249 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VAPAQ9P0L0 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC21.2■□□□□ 0.99
VAPAQ9P0L0 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.99
VAPAQ9P0L0 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
VAPAQ9P0L0 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
VAPAQ9P0L0 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
VAPAQ9P0L0 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
VAPAQ9P0L0 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC21.2■□□□□ 0.98
VAPAQ9P0L0 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
VAPAQ9P0L0 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
VAPAQ9P0L0 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC21.2■□□□□ 0.98
VAPAQ9P0L0 MIR4281-201ENST00000580852 62 ntBASIC21.2■□□□□ 0.98
VAPAQ9P0L0 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
VAPAQ9P0L0 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
VAPAQ9P0L0 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
VAPAQ9P0L0 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC21.2■□□□□ 0.98
VAPAQ9P0L0 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC21.2■□□□□ 0.98
VAPAQ9P0L0 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC21.2■□□□□ 0.98
VAPAQ9P0L0 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC21.2■□□□□ 0.98
VAPAQ9P0L0 AL353803.4-201ENST00000565882 1934 ntBASIC21.19■□□□□ 0.98
VAPAQ9P0L0 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
VAPAQ9P0L0 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
VAPAQ9P0L0 WWC2-AS2-201ENST00000578387 2183 ntBASIC21.19■□□□□ 0.98
VAPAQ9P0L0 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC21.19■□□□□ 0.98
VAPAQ9P0L0 AC004448.1-201ENST00000458332 883 ntBASIC21.19■□□□□ 0.98
VAPAQ9P0L0 NTF6A-201ENST00000591175 560 ntBASIC21.19■□□□□ 0.98
VAPAQ9P0L0 PVT1_1.1-201ENST00000615125 194 ntBASIC21.19■□□□□ 0.98
VAPAQ9P0L0 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
VAPAQ9P0L0 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
VAPAQ9P0L0 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
VAPAQ9P0L0 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
VAPAQ9P0L0 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
VAPAQ9P0L0 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
VAPAQ9P0L0 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
VAPAQ9P0L0 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
VAPAQ9P0L0 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC21.18■□□□□ 0.98
VAPAQ9P0L0 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC21.18■□□□□ 0.98
VAPAQ9P0L0 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
VAPAQ9P0L0 KRT18P24-201ENST00000344739 1156 ntBASIC21.18■□□□□ 0.98
VAPAQ9P0L0 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
VAPAQ9P0L0 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
VAPAQ9P0L0 USF2-207ENST00000595068 1612 ntTSL 5 BASIC21.18■□□□□ 0.98
VAPAQ9P0L0 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
VAPAQ9P0L0 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VAPAQ9P0L0 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VAPAQ9P0L0 ABHD17AP5-201ENST00000580133 923 ntBASIC21.17■□□□□ 0.98
VAPAQ9P0L0 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VAPAQ9P0L0 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VAPAQ9P0L0 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
VAPAQ9P0L0 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VAPAQ9P0L0 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VAPAQ9P0L0 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
VAPAQ9P0L0 MYB-221ENST00000527615 2381 ntTSL 5 BASIC21.16■□□□□ 0.98
VAPAQ9P0L0 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
VAPAQ9P0L0 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VAPAQ9P0L0 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VAPAQ9P0L0 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
VAPAQ9P0L0 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VAPAQ9P0L0 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
VAPAQ9P0L0 AC137767.1-201ENST00000602918 1920 ntBASIC21.16■□□□□ 0.98
VAPAQ9P0L0 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VAPAQ9P0L0 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
VAPAQ9P0L0 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
VAPAQ9P0L0 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VAPAQ9P0L0 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VAPAQ9P0L0 THA1P-201ENST00000590384 1145 ntBASIC21.16■□□□□ 0.98
VAPAQ9P0L0 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC21.16■□□□□ 0.98
VAPAQ9P0L0 BHLHE23-202ENST00000612929 1109 ntBASIC21.16■□□□□ 0.98
VAPAQ9P0L0 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
VAPAQ9P0L0 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC21.16■□□□□ 0.98
VAPAQ9P0L0 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
VAPAQ9P0L0 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
VAPAQ9P0L0 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC21.15■□□□□ 0.98
VAPAQ9P0L0 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC21.15■□□□□ 0.98
VAPAQ9P0L0 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC21.15■□□□□ 0.98
VAPAQ9P0L0 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC21.15■□□□□ 0.98
VAPAQ9P0L0 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
VAPAQ9P0L0 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
VAPAQ9P0L0 BRD4-212ENST00000630599 726 ntTSL 2 BASIC21.15■□□□□ 0.98
VAPAQ9P0L0 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
VAPAQ9P0L0 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
VAPAQ9P0L0 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC21.15■□□□□ 0.98
VAPAQ9P0L0 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC21.15■□□□□ 0.98
VAPAQ9P0L0 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC21.15■□□□□ 0.98
VAPAQ9P0L0 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VAPAQ9P0L0 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC21.15■□□□□ 0.98
VAPAQ9P0L0 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
VAPAQ9P0L0 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
VAPAQ9P0L0 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
VAPAQ9P0L0 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC21.14■□□□□ 0.97
VAPAQ9P0L0 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC21.14■□□□□ 0.97
VAPAQ9P0L0 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
VAPAQ9P0L0 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC21.14■□□□□ 0.97
VAPAQ9P0L0 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC21.13■□□□□ 0.97
VAPAQ9P0L0 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
VAPAQ9P0L0 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
VAPAQ9P0L0 BEX3-202ENST00000372634 753 ntTSL 2 BASIC21.13■□□□□ 0.97
VAPAQ9P0L0 AC004987.1-201ENST00000428627 508 ntBASIC21.13■□□□□ 0.97
VAPAQ9P0L0 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
VAPAQ9P0L0 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
VAPAQ9P0L0 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms