Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
DDX56Q9NY93 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
DDX56Q9NY93 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
DDX56Q9NY93 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
DDX56Q9NY93 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC23.33■■□□□ 1.33
DDX56Q9NY93 RNF146-205ENST00000477776 762 ntTSL 3 BASIC23.33■■□□□ 1.33
DDX56Q9NY93 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
DDX56Q9NY93 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.33
DDX56Q9NY93 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC23.33■■□□□ 1.33
DDX56Q9NY93 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
DDX56Q9NY93 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC23.33■■□□□ 1.33
DDX56Q9NY93 AL117328.2-201ENST00000624617 1940 ntBASIC23.33■■□□□ 1.32
DDX56Q9NY93 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC23.33■■□□□ 1.32
DDX56Q9NY93 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.32
DDX56Q9NY93 AC144652.1-201ENST00000609974 1624 ntBASIC23.33■■□□□ 1.32
DDX56Q9NY93 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
DDX56Q9NY93 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
DDX56Q9NY93 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC23.33■■□□□ 1.32
DDX56Q9NY93 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC23.32■■□□□ 1.32
DDX56Q9NY93 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC23.32■■□□□ 1.32
DDX56Q9NY93 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC23.32■■□□□ 1.32
DDX56Q9NY93 Z92544.1-202ENST00000571933 1220 ntBASIC23.32■■□□□ 1.32
DDX56Q9NY93 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
DDX56Q9NY93 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
DDX56Q9NY93 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC23.32■■□□□ 1.32
DDX56Q9NY93 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC23.31■■□□□ 1.32
DDX56Q9NY93 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC23.31■■□□□ 1.32
DDX56Q9NY93 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
DDX56Q9NY93 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC23.31■■□□□ 1.32
DDX56Q9NY93 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC23.31■■□□□ 1.32
DDX56Q9NY93 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
DDX56Q9NY93 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
DDX56Q9NY93 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
DDX56Q9NY93 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC23.31■■□□□ 1.32
DDX56Q9NY93 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC23.3■■□□□ 1.32
DDX56Q9NY93 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC23.3■■□□□ 1.32
DDX56Q9NY93 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC23.3■■□□□ 1.32
DDX56Q9NY93 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC23.3■■□□□ 1.32
DDX56Q9NY93 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
DDX56Q9NY93 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC23.3■■□□□ 1.32
DDX56Q9NY93 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
DDX56Q9NY93 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC23.3■■□□□ 1.32
DDX56Q9NY93 KRT125P-201ENST00000546827 989 ntBASIC23.3■■□□□ 1.32
DDX56Q9NY93 AC092028.1-203ENST00000608262 953 ntBASIC23.3■■□□□ 1.32
DDX56Q9NY93 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC23.3■■□□□ 1.32
DDX56Q9NY93 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
DDX56Q9NY93 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
DDX56Q9NY93 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
DDX56Q9NY93 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC23.3■■□□□ 1.32
DDX56Q9NY93 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC23.3■■□□□ 1.32
DDX56Q9NY93 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
DDX56Q9NY93 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC23.29■■□□□ 1.32
DDX56Q9NY93 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC23.29■■□□□ 1.32
DDX56Q9NY93 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC23.29■■□□□ 1.32
DDX56Q9NY93 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
DDX56Q9NY93 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC23.29■■□□□ 1.32
DDX56Q9NY93 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC23.29■■□□□ 1.32
DDX56Q9NY93 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
DDX56Q9NY93 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
DDX56Q9NY93 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC23.28■■□□□ 1.32
DDX56Q9NY93 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC23.28■■□□□ 1.32
DDX56Q9NY93 CLTA-206ENST00000466396 695 ntTSL 2 BASIC23.28■■□□□ 1.32
DDX56Q9NY93 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC23.28■■□□□ 1.32
DDX56Q9NY93 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
DDX56Q9NY93 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
DDX56Q9NY93 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
DDX56Q9NY93 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC23.27■■□□□ 1.32
DDX56Q9NY93 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC23.27■■□□□ 1.32
DDX56Q9NY93 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC23.27■■□□□ 1.32
DDX56Q9NY93 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC23.27■■□□□ 1.32
DDX56Q9NY93 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC23.27■■□□□ 1.32
DDX56Q9NY93 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC23.27■■□□□ 1.32
DDX56Q9NY93 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC23.27■■□□□ 1.32
DDX56Q9NY93 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC23.27■■□□□ 1.32
DDX56Q9NY93 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
DDX56Q9NY93 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC23.27■■□□□ 1.32
DDX56Q9NY93 ESRRAP2-201ENST00000418437 1549 ntBASIC23.27■■□□□ 1.32
DDX56Q9NY93 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC23.27■■□□□ 1.32
DDX56Q9NY93 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
DDX56Q9NY93 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.31
DDX56Q9NY93 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.31
DDX56Q9NY93 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC23.27■■□□□ 1.31
DDX56Q9NY93 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC23.26■■□□□ 1.31
DDX56Q9NY93 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC23.26■■□□□ 1.31
DDX56Q9NY93 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
DDX56Q9NY93 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC23.26■■□□□ 1.31
DDX56Q9NY93 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
DDX56Q9NY93 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
DDX56Q9NY93 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
DDX56Q9NY93 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC23.25■■□□□ 1.31
DDX56Q9NY93 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC23.25■■□□□ 1.31
DDX56Q9NY93 RARRES2P1-201ENST00000474487 481 ntBASIC23.25■■□□□ 1.31
DDX56Q9NY93 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC23.25■■□□□ 1.31
DDX56Q9NY93 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
DDX56Q9NY93 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
DDX56Q9NY93 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC23.24■■□□□ 1.31
DDX56Q9NY93 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
DDX56Q9NY93 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC23.24■■□□□ 1.31
DDX56Q9NY93 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC23.24■■□□□ 1.31
DDX56Q9NY93 COMT-203ENST00000403184 2217 ntTSL 2 BASIC23.24■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms