Protein–RNA interactions for Protein: Q9NUD5

ZCCHC3, Zinc finger CCHC domain-containing protein 3, humanhuman

Known RBP Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZCCHC3Q9NUD5 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
ZCCHC3Q9NUD5 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
ZCCHC3Q9NUD5 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC21.02■□□□□ 0.96
ZCCHC3Q9NUD5 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
ZCCHC3Q9NUD5 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
ZCCHC3Q9NUD5 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
ZCCHC3Q9NUD5 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
ZCCHC3Q9NUD5 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC21.02■□□□□ 0.96
ZCCHC3Q9NUD5 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
ZCCHC3Q9NUD5 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC21.02■□□□□ 0.96
ZCCHC3Q9NUD5 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
ZCCHC3Q9NUD5 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
ZCCHC3Q9NUD5 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
ZCCHC3Q9NUD5 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
ZCCHC3Q9NUD5 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC21.02■□□□□ 0.96
ZCCHC3Q9NUD5 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC21.02■□□□□ 0.96
ZCCHC3Q9NUD5 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC21.02■□□□□ 0.96
ZCCHC3Q9NUD5 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
ZCCHC3Q9NUD5 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
ZCCHC3Q9NUD5 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
ZCCHC3Q9NUD5 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
ZCCHC3Q9NUD5 CLTA-206ENST00000466396 695 ntTSL 2 BASIC21.01■□□□□ 0.95
ZCCHC3Q9NUD5 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC21.01■□□□□ 0.95
ZCCHC3Q9NUD5 MTDHP2-201ENST00000601468 714 ntBASIC21.01■□□□□ 0.95
ZCCHC3Q9NUD5 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
ZCCHC3Q9NUD5 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC21.01■□□□□ 0.95
ZCCHC3Q9NUD5 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
ZCCHC3Q9NUD5 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
ZCCHC3Q9NUD5 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
ZCCHC3Q9NUD5 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC21■□□□□ 0.95
ZCCHC3Q9NUD5 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
ZCCHC3Q9NUD5 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
ZCCHC3Q9NUD5 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC21■□□□□ 0.95
ZCCHC3Q9NUD5 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC21■□□□□ 0.95
ZCCHC3Q9NUD5 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC21■□□□□ 0.95
ZCCHC3Q9NUD5 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC21■□□□□ 0.95
ZCCHC3Q9NUD5 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
ZCCHC3Q9NUD5 AL353803.4-201ENST00000565882 1934 ntBASIC21■□□□□ 0.95
ZCCHC3Q9NUD5 GALC-202ENST00000393568 2054 ntTSL 2 BASIC21■□□□□ 0.95
ZCCHC3Q9NUD5 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC20.99■□□□□ 0.95
ZCCHC3Q9NUD5 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
ZCCHC3Q9NUD5 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
ZCCHC3Q9NUD5 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC20.99■□□□□ 0.95
ZCCHC3Q9NUD5 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
ZCCHC3Q9NUD5 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC20.99■□□□□ 0.95
ZCCHC3Q9NUD5 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
ZCCHC3Q9NUD5 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
ZCCHC3Q9NUD5 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC20.99■□□□□ 0.95
ZCCHC3Q9NUD5 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
ZCCHC3Q9NUD5 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC20.99■□□□□ 0.95
ZCCHC3Q9NUD5 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
ZCCHC3Q9NUD5 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
ZCCHC3Q9NUD5 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
ZCCHC3Q9NUD5 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
ZCCHC3Q9NUD5 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC20.98■□□□□ 0.95
ZCCHC3Q9NUD5 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC20.98■□□□□ 0.95
ZCCHC3Q9NUD5 TSPY9P-201ENST00000440215 945 ntBASIC20.98■□□□□ 0.95
ZCCHC3Q9NUD5 TSPY11P-201ENST00000442607 1045 ntBASIC20.98■□□□□ 0.95
ZCCHC3Q9NUD5 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC20.98■□□□□ 0.95
ZCCHC3Q9NUD5 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
ZCCHC3Q9NUD5 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
ZCCHC3Q9NUD5 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
ZCCHC3Q9NUD5 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
ZCCHC3Q9NUD5 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC20.97■□□□□ 0.95
ZCCHC3Q9NUD5 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
ZCCHC3Q9NUD5 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
ZCCHC3Q9NUD5 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
ZCCHC3Q9NUD5 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
ZCCHC3Q9NUD5 C1orf229-201ENST00000623686 2258 ntBASIC20.97■□□□□ 0.95
ZCCHC3Q9NUD5 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
ZCCHC3Q9NUD5 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
ZCCHC3Q9NUD5 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC20.97■□□□□ 0.95
ZCCHC3Q9NUD5 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
ZCCHC3Q9NUD5 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
ZCCHC3Q9NUD5 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
ZCCHC3Q9NUD5 AC144652.1-201ENST00000609974 1624 ntBASIC20.96■□□□□ 0.95
ZCCHC3Q9NUD5 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC20.96■□□□□ 0.95
ZCCHC3Q9NUD5 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
ZCCHC3Q9NUD5 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
ZCCHC3Q9NUD5 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
ZCCHC3Q9NUD5 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
ZCCHC3Q9NUD5 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
ZCCHC3Q9NUD5 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
ZCCHC3Q9NUD5 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
ZCCHC3Q9NUD5 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
ZCCHC3Q9NUD5 CD72-202ENST00000378430 585 ntTSL 3 BASIC20.95■□□□□ 0.94
ZCCHC3Q9NUD5 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
ZCCHC3Q9NUD5 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC20.95■□□□□ 0.94
ZCCHC3Q9NUD5 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
ZCCHC3Q9NUD5 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC20.95■□□□□ 0.94
ZCCHC3Q9NUD5 AC010997.5-201ENST00000609182 354 ntBASIC20.95■□□□□ 0.94
ZCCHC3Q9NUD5 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
ZCCHC3Q9NUD5 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC20.95■□□□□ 0.94
ZCCHC3Q9NUD5 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
ZCCHC3Q9NUD5 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
ZCCHC3Q9NUD5 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
ZCCHC3Q9NUD5 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC20.94■□□□□ 0.94
ZCCHC3Q9NUD5 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
ZCCHC3Q9NUD5 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
ZCCHC3Q9NUD5 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC20.94■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms