Protein–RNA interactions for Protein: Q9NQE9

HINT3, Histidine triad nucleotide-binding protein 3, humanhuman

Known RBP Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HINT3Q9NQE9 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC20.22■□□□□ 0.83
HINT3Q9NQE9 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC20.22■□□□□ 0.83
HINT3Q9NQE9 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
HINT3Q9NQE9 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HINT3Q9NQE9 LBH-205ENST00000407930 756 ntTSL 2 BASIC20.22■□□□□ 0.83
HINT3Q9NQE9 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
HINT3Q9NQE9 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HINT3Q9NQE9 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
HINT3Q9NQE9 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC20.22■□□□□ 0.83
HINT3Q9NQE9 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HINT3Q9NQE9 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HINT3Q9NQE9 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
HINT3Q9NQE9 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HINT3Q9NQE9 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HINT3Q9NQE9 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HINT3Q9NQE9 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC20.21■□□□□ 0.83
HINT3Q9NQE9 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HINT3Q9NQE9 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HINT3Q9NQE9 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
HINT3Q9NQE9 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HINT3Q9NQE9 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
HINT3Q9NQE9 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC20.2■□□□□ 0.83
HINT3Q9NQE9 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC20.2■□□□□ 0.82
HINT3Q9NQE9 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HINT3Q9NQE9 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HINT3Q9NQE9 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
HINT3Q9NQE9 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HINT3Q9NQE9 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HINT3Q9NQE9 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HINT3Q9NQE9 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC20.2■□□□□ 0.82
HINT3Q9NQE9 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HINT3Q9NQE9 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
HINT3Q9NQE9 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HINT3Q9NQE9 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HINT3Q9NQE9 AC127496.7-201ENST00000625110 1798 ntBASIC20.19■□□□□ 0.82
HINT3Q9NQE9 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC20.19■□□□□ 0.82
HINT3Q9NQE9 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
HINT3Q9NQE9 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC20.19■□□□□ 0.82
HINT3Q9NQE9 AC103724.3-201ENST00000564481 992 ntBASIC20.19■□□□□ 0.82
HINT3Q9NQE9 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC20.19■□□□□ 0.82
HINT3Q9NQE9 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
HINT3Q9NQE9 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HINT3Q9NQE9 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
HINT3Q9NQE9 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
HINT3Q9NQE9 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC20.18■□□□□ 0.82
HINT3Q9NQE9 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
HINT3Q9NQE9 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HINT3Q9NQE9 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC20.18■□□□□ 0.82
HINT3Q9NQE9 AL031848.2-201ENST00000607670 837 ntBASIC20.18■□□□□ 0.82
HINT3Q9NQE9 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC20.18■□□□□ 0.82
HINT3Q9NQE9 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
HINT3Q9NQE9 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
HINT3Q9NQE9 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
HINT3Q9NQE9 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC20.18■□□□□ 0.82
HINT3Q9NQE9 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HINT3Q9NQE9 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HINT3Q9NQE9 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
HINT3Q9NQE9 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC20.17■□□□□ 0.82
HINT3Q9NQE9 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.17■□□□□ 0.82
HINT3Q9NQE9 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC20.17■□□□□ 0.82
HINT3Q9NQE9 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HINT3Q9NQE9 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
HINT3Q9NQE9 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
HINT3Q9NQE9 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HINT3Q9NQE9 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC20.17■□□□□ 0.82
HINT3Q9NQE9 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
HINT3Q9NQE9 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
HINT3Q9NQE9 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HINT3Q9NQE9 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC20.17■□□□□ 0.82
HINT3Q9NQE9 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
HINT3Q9NQE9 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
HINT3Q9NQE9 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
HINT3Q9NQE9 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
HINT3Q9NQE9 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC20.16■□□□□ 0.82
HINT3Q9NQE9 AC120024.1-201ENST00000562672 995 ntBASIC20.16■□□□□ 0.82
HINT3Q9NQE9 AL451085.2-201ENST00000605085 799 ntBASIC20.16■□□□□ 0.82
HINT3Q9NQE9 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC20.16■□□□□ 0.82
HINT3Q9NQE9 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
HINT3Q9NQE9 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC20.16■□□□□ 0.82
HINT3Q9NQE9 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
HINT3Q9NQE9 ESRRAP2-201ENST00000418437 1549 ntBASIC20.16■□□□□ 0.82
HINT3Q9NQE9 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC20.16■□□□□ 0.82
HINT3Q9NQE9 AF131216.4-201ENST00000638924 1588 ntBASIC20.16■□□□□ 0.82
HINT3Q9NQE9 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
HINT3Q9NQE9 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
HINT3Q9NQE9 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HINT3Q9NQE9 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HINT3Q9NQE9 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
HINT3Q9NQE9 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
HINT3Q9NQE9 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
HINT3Q9NQE9 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC20.15■□□□□ 0.82
HINT3Q9NQE9 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HINT3Q9NQE9 AC242852.2-201ENST00000615738 1807 ntBASIC20.15■□□□□ 0.82
HINT3Q9NQE9 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
HINT3Q9NQE9 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
HINT3Q9NQE9 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC20.15■□□□□ 0.82
HINT3Q9NQE9 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
HINT3Q9NQE9 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HINT3Q9NQE9 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
HINT3Q9NQE9 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms