Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
PCDH9Q9HC56 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC23.14■■□□□ 1.3
PCDH9Q9HC56 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.3
PCDH9Q9HC56 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC23.14■■□□□ 1.3
PCDH9Q9HC56 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
PCDH9Q9HC56 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
PCDH9Q9HC56 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC23.14■■□□□ 1.29
PCDH9Q9HC56 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC23.14■■□□□ 1.29
PCDH9Q9HC56 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC23.14■■□□□ 1.29
PCDH9Q9HC56 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC23.14■■□□□ 1.29
PCDH9Q9HC56 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC23.14■■□□□ 1.29
PCDH9Q9HC56 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
PCDH9Q9HC56 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC23.14■■□□□ 1.29
PCDH9Q9HC56 CLTA-210ENST00000540080 989 ntTSL 2 BASIC23.14■■□□□ 1.29
PCDH9Q9HC56 AC079630.1-202ENST00000618127 1840 ntBASIC23.14■■□□□ 1.29
PCDH9Q9HC56 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC23.14■■□□□ 1.29
PCDH9Q9HC56 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC23.14■■□□□ 1.29
PCDH9Q9HC56 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC23.14■■□□□ 1.29
PCDH9Q9HC56 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
PCDH9Q9HC56 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC23.13■■□□□ 1.29
PCDH9Q9HC56 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
PCDH9Q9HC56 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC23.13■■□□□ 1.29
PCDH9Q9HC56 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC23.13■■□□□ 1.29
PCDH9Q9HC56 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
PCDH9Q9HC56 GCA-201ENST00000233612 1694 ntTSL 2 BASIC23.13■■□□□ 1.29
PCDH9Q9HC56 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
PCDH9Q9HC56 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC23.12■■□□□ 1.29
PCDH9Q9HC56 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC23.12■■□□□ 1.29
PCDH9Q9HC56 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC23.12■■□□□ 1.29
PCDH9Q9HC56 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
PCDH9Q9HC56 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC23.12■■□□□ 1.29
PCDH9Q9HC56 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC23.12■■□□□ 1.29
PCDH9Q9HC56 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC23.12■■□□□ 1.29
PCDH9Q9HC56 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
PCDH9Q9HC56 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC23.12■■□□□ 1.29
PCDH9Q9HC56 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
PCDH9Q9HC56 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
PCDH9Q9HC56 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
PCDH9Q9HC56 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
PCDH9Q9HC56 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
PCDH9Q9HC56 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC23.11■■□□□ 1.29
PCDH9Q9HC56 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC23.11■■□□□ 1.29
PCDH9Q9HC56 CREM-229ENST00000474362 1030 ntTSL 2 BASIC23.11■■□□□ 1.29
PCDH9Q9HC56 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC23.11■■□□□ 1.29
PCDH9Q9HC56 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
PCDH9Q9HC56 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC23.11■■□□□ 1.29
PCDH9Q9HC56 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
PCDH9Q9HC56 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
PCDH9Q9HC56 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
PCDH9Q9HC56 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC23.1■■□□□ 1.29
PCDH9Q9HC56 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
PCDH9Q9HC56 GUSBP5-201ENST00000418136 578 ntBASIC23.1■■□□□ 1.29
PCDH9Q9HC56 TSPY9P-201ENST00000440215 945 ntBASIC23.1■■□□□ 1.29
PCDH9Q9HC56 TSPY11P-201ENST00000442607 1045 ntBASIC23.1■■□□□ 1.29
PCDH9Q9HC56 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC23.1■■□□□ 1.29
PCDH9Q9HC56 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC23.1■■□□□ 1.29
PCDH9Q9HC56 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC23.1■■□□□ 1.29
PCDH9Q9HC56 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC23.1■■□□□ 1.29
PCDH9Q9HC56 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
PCDH9Q9HC56 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
PCDH9Q9HC56 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC23.09■■□□□ 1.29
PCDH9Q9HC56 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
PCDH9Q9HC56 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC23.09■■□□□ 1.29
PCDH9Q9HC56 GUSBP5-202ENST00000510805 1989 ntBASIC23.09■■□□□ 1.29
PCDH9Q9HC56 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC23.09■■□□□ 1.29
PCDH9Q9HC56 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC23.08■■□□□ 1.29
PCDH9Q9HC56 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC23.08■■□□□ 1.29
PCDH9Q9HC56 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC23.08■■□□□ 1.29
PCDH9Q9HC56 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC23.08■■□□□ 1.29
PCDH9Q9HC56 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
PCDH9Q9HC56 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC23.08■■□□□ 1.29
PCDH9Q9HC56 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC23.08■■□□□ 1.29
PCDH9Q9HC56 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
PCDH9Q9HC56 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
PCDH9Q9HC56 EP400NL-214ENST00000641289 2402 ntBASIC23.08■■□□□ 1.28
PCDH9Q9HC56 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
PCDH9Q9HC56 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
PCDH9Q9HC56 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC23.07■■□□□ 1.28
PCDH9Q9HC56 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
PCDH9Q9HC56 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC23.07■■□□□ 1.28
PCDH9Q9HC56 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC23.07■■□□□ 1.28
PCDH9Q9HC56 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
PCDH9Q9HC56 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.28
PCDH9Q9HC56 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
PCDH9Q9HC56 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC23.07■■□□□ 1.28
PCDH9Q9HC56 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
PCDH9Q9HC56 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC23.07■■□□□ 1.28
PCDH9Q9HC56 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC23.07■■□□□ 1.28
PCDH9Q9HC56 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
PCDH9Q9HC56 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC23.07■■□□□ 1.28
PCDH9Q9HC56 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC23.07■■□□□ 1.28
PCDH9Q9HC56 COMT-203ENST00000403184 2217 ntTSL 2 BASIC23.06■■□□□ 1.28
PCDH9Q9HC56 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
PCDH9Q9HC56 TERT-206ENST00000508104 2486 ntTSL 5 BASIC23.06■■□□□ 1.28
PCDH9Q9HC56 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC23.06■■□□□ 1.28
PCDH9Q9HC56 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
PCDH9Q9HC56 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC23.06■■□□□ 1.28
PCDH9Q9HC56 UNC93B8-201ENST00000511903 705 ntBASIC23.06■■□□□ 1.28
PCDH9Q9HC56 MTDHP2-201ENST00000601468 714 ntBASIC23.06■■□□□ 1.28
PCDH9Q9HC56 MIR6722-201ENST00000617286 78 ntBASIC23.06■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms