Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LIME1Q9H400 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
LIME1Q9H400 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
LIME1Q9H400 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC19.65■□□□□ 0.74
LIME1Q9H400 AC011298.3-201ENST00000615796 283 ntBASIC19.65■□□□□ 0.74
LIME1Q9H400 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC19.65■□□□□ 0.74
LIME1Q9H400 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LIME1Q9H400 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
LIME1Q9H400 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
LIME1Q9H400 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
LIME1Q9H400 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC19.64■□□□□ 0.73
LIME1Q9H400 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC19.64■□□□□ 0.73
LIME1Q9H400 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
LIME1Q9H400 AC022517.1-201ENST00000592429 346 ntBASIC19.64■□□□□ 0.73
LIME1Q9H400 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC19.64■□□□□ 0.73
LIME1Q9H400 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LIME1Q9H400 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
LIME1Q9H400 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC19.64■□□□□ 0.73
LIME1Q9H400 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC19.64■□□□□ 0.73
LIME1Q9H400 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
LIME1Q9H400 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LIME1Q9H400 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LIME1Q9H400 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIME1Q9H400 AC068473.5-201ENST00000616428 2072 ntBASIC19.63■□□□□ 0.73
LIME1Q9H400 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC19.63■□□□□ 0.73
LIME1Q9H400 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC19.63■□□□□ 0.73
LIME1Q9H400 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LIME1Q9H400 AC141586.4-201ENST00000624558 1573 ntBASIC19.63■□□□□ 0.73
LIME1Q9H400 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
LIME1Q9H400 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC19.63■□□□□ 0.73
LIME1Q9H400 ASB1-202ENST00000409297 878 ntTSL 5 BASIC19.63■□□□□ 0.73
LIME1Q9H400 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LIME1Q9H400 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC19.63■□□□□ 0.73
LIME1Q9H400 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LIME1Q9H400 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIME1Q9H400 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
LIME1Q9H400 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIME1Q9H400 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIME1Q9H400 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIME1Q9H400 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LIME1Q9H400 AC009102.2-201ENST00000606772 1639 ntBASIC19.62■□□□□ 0.73
LIME1Q9H400 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIME1Q9H400 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC19.62■□□□□ 0.73
LIME1Q9H400 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
LIME1Q9H400 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC19.62■□□□□ 0.73
LIME1Q9H400 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIME1Q9H400 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIME1Q9H400 HACD1-201ENST00000326961 773 ntTSL 2 BASIC19.62■□□□□ 0.73
LIME1Q9H400 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIME1Q9H400 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LIME1Q9H400 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LIME1Q9H400 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC19.62■□□□□ 0.73
LIME1Q9H400 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LIME1Q9H400 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
LIME1Q9H400 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LIME1Q9H400 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
LIME1Q9H400 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LIME1Q9H400 HES6-206ENST00000409574 738 ntTSL 2 BASIC19.61■□□□□ 0.73
LIME1Q9H400 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LIME1Q9H400 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIME1Q9H400 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC19.61■□□□□ 0.73
LIME1Q9H400 AL138724.1-201ENST00000606771 1088 ntBASIC19.61■□□□□ 0.73
LIME1Q9H400 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LIME1Q9H400 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC19.61■□□□□ 0.73
LIME1Q9H400 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIME1Q9H400 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIME1Q9H400 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIME1Q9H400 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC19.61■□□□□ 0.73
LIME1Q9H400 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC19.6■□□□□ 0.73
LIME1Q9H400 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIME1Q9H400 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIME1Q9H400 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIME1Q9H400 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC19.6■□□□□ 0.73
LIME1Q9H400 AC012676.1-201ENST00000574705 1949 ntBASIC19.6■□□□□ 0.73
LIME1Q9H400 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
LIME1Q9H400 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC19.6■□□□□ 0.73
LIME1Q9H400 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC19.59■□□□□ 0.73
LIME1Q9H400 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
LIME1Q9H400 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
LIME1Q9H400 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
LIME1Q9H400 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LIME1Q9H400 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
LIME1Q9H400 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC19.59■□□□□ 0.73
LIME1Q9H400 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
LIME1Q9H400 AL031602.1-201ENST00000633169 911 ntBASIC19.59■□□□□ 0.73
LIME1Q9H400 AC131274.2-201ENST00000580697 1507 ntBASIC19.59■□□□□ 0.73
LIME1Q9H400 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC19.59■□□□□ 0.73
LIME1Q9H400 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC19.59■□□□□ 0.73
LIME1Q9H400 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
LIME1Q9H400 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
LIME1Q9H400 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
LIME1Q9H400 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.73
LIME1Q9H400 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC19.58■□□□□ 0.73
LIME1Q9H400 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC19.58■□□□□ 0.72
LIME1Q9H400 AC006455.2-201ENST00000429931 906 ntBASIC19.58■□□□□ 0.72
LIME1Q9H400 AC034268.1-201ENST00000441047 882 ntBASIC19.58■□□□□ 0.72
LIME1Q9H400 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
LIME1Q9H400 AL137784.2-201ENST00000607332 1000 ntBASIC19.58■□□□□ 0.72
LIME1Q9H400 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC19.58■□□□□ 0.72
LIME1Q9H400 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms