Protein–RNA interactions for Protein: Q99758

ABCA3, ATP-binding cassette sub-family A member 3, humanhuman

Predictions only

Length 1,704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA3Q99758 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
ABCA3Q99758 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC30.45■■■□□ 2.47
ABCA3Q99758 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC30.45■■■□□ 2.47
ABCA3Q99758 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC30.45■■■□□ 2.47
ABCA3Q99758 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC30.45■■■□□ 2.47
ABCA3Q99758 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC30.45■■■□□ 2.47
ABCA3Q99758 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC30.45■■■□□ 2.47
ABCA3Q99758 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC30.45■■■□□ 2.47
ABCA3Q99758 MPST-204ENST00000404393 1329 ntTSL 5 BASIC30.45■■■□□ 2.46
ABCA3Q99758 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC30.45■■■□□ 2.46
ABCA3Q99758 EI24-204ENST00000527235 1625 ntTSL 5 BASIC30.45■■■□□ 2.46
ABCA3Q99758 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC30.44■■■□□ 2.46
ABCA3Q99758 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC30.44■■■□□ 2.46
ABCA3Q99758 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC30.44■■■□□ 2.46
ABCA3Q99758 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC30.44■■■□□ 2.46
ABCA3Q99758 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
ABCA3Q99758 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
ABCA3Q99758 HSCB-202ENST00000398941 955 ntTSL 2 BASIC30.44■■■□□ 2.46
ABCA3Q99758 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC30.44■■■□□ 2.46
ABCA3Q99758 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC30.44■■■□□ 2.46
ABCA3Q99758 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC30.43■■■□□ 2.46
ABCA3Q99758 AC091060.1-201ENST00000623524 1766 ntBASIC30.43■■■□□ 2.46
ABCA3Q99758 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
ABCA3Q99758 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC30.43■■■□□ 2.46
ABCA3Q99758 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC30.43■■■□□ 2.46
ABCA3Q99758 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC30.43■■■□□ 2.46
ABCA3Q99758 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC30.43■■■□□ 2.46
ABCA3Q99758 AC026185.1-201ENST00000445748 174 ntBASIC30.43■■■□□ 2.46
ABCA3Q99758 PPP1R14BP3-201ENST00000509033 445 ntBASIC30.43■■■□□ 2.46
ABCA3Q99758 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC30.43■■■□□ 2.46
ABCA3Q99758 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC30.43■■■□□ 2.46
ABCA3Q99758 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
ABCA3Q99758 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC30.43■■■□□ 2.46
ABCA3Q99758 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC30.42■■■□□ 2.46
ABCA3Q99758 CROCCP5-201ENST00000436658 830 ntBASIC30.42■■■□□ 2.46
ABCA3Q99758 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC30.42■■■□□ 2.46
ABCA3Q99758 AL161729.1-201ENST00000604104 1402 ntBASIC30.42■■■□□ 2.46
ABCA3Q99758 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
ABCA3Q99758 STX7-201ENST00000367937 1090 ntTSL 5 BASIC30.42■■■□□ 2.46
ABCA3Q99758 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC30.42■■■□□ 2.46
ABCA3Q99758 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
ABCA3Q99758 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC30.42■■■□□ 2.46
ABCA3Q99758 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
ABCA3Q99758 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC30.41■■■□□ 2.46
ABCA3Q99758 GAS2L1P2-201ENST00000436355 1356 ntBASIC30.41■■■□□ 2.46
ABCA3Q99758 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC30.41■■■□□ 2.46
ABCA3Q99758 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC30.41■■■□□ 2.46
ABCA3Q99758 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC30.41■■■□□ 2.46
ABCA3Q99758 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
ABCA3Q99758 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
ABCA3Q99758 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC30.4■■■□□ 2.46
ABCA3Q99758 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC30.4■■■□□ 2.46
ABCA3Q99758 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC30.4■■■□□ 2.46
ABCA3Q99758 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
ABCA3Q99758 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
ABCA3Q99758 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC30.4■■■□□ 2.46
ABCA3Q99758 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
ABCA3Q99758 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC30.39■■■□□ 2.46
ABCA3Q99758 GALNS-213ENST00000569433 723 ntTSL 3 BASIC30.39■■■□□ 2.46
ABCA3Q99758 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC30.39■■■□□ 2.46
ABCA3Q99758 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC30.39■■■□□ 2.46
ABCA3Q99758 ALDH1A3-203ENST00000557963 1670 ntBASIC30.39■■■□□ 2.46
ABCA3Q99758 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC30.39■■■□□ 2.46
ABCA3Q99758 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC30.39■■■□□ 2.45
ABCA3Q99758 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC30.39■■■□□ 2.45
ABCA3Q99758 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC30.39■■■□□ 2.45
ABCA3Q99758 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC30.39■■■□□ 2.45
ABCA3Q99758 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
ABCA3Q99758 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC30.38■■■□□ 2.45
ABCA3Q99758 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
ABCA3Q99758 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
ABCA3Q99758 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC30.38■■■□□ 2.45
ABCA3Q99758 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC30.38■■■□□ 2.45
ABCA3Q99758 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC30.38■■■□□ 2.45
ABCA3Q99758 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC30.37■■■□□ 2.45
ABCA3Q99758 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC30.37■■■□□ 2.45
ABCA3Q99758 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
ABCA3Q99758 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC30.37■■■□□ 2.45
ABCA3Q99758 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
ABCA3Q99758 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
ABCA3Q99758 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
ABCA3Q99758 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC30.36■■■□□ 2.45
ABCA3Q99758 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC30.36■■■□□ 2.45
ABCA3Q99758 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC30.36■■■□□ 2.45
ABCA3Q99758 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC30.36■■■□□ 2.45
ABCA3Q99758 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC30.36■■■□□ 2.45
ABCA3Q99758 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
ABCA3Q99758 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC30.36■■■□□ 2.45
ABCA3Q99758 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC30.35■■■□□ 2.45
ABCA3Q99758 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
ABCA3Q99758 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
ABCA3Q99758 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC30.35■■■□□ 2.45
ABCA3Q99758 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC30.35■■■□□ 2.45
ABCA3Q99758 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC30.34■■■□□ 2.45
ABCA3Q99758 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
ABCA3Q99758 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
ABCA3Q99758 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC30.34■■■□□ 2.45
ABCA3Q99758 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC30.34■■■□□ 2.45
ABCA3Q99758 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
ABCA3Q99758 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
Retrieved 100 of 98,524 protein–RNA pairs in 67.6 ms