Protein–RNA interactions for Protein: Q96S90

LYSMD1, LysM and putative peptidoglycan-binding domain-containing protein 1, humanhuman

Predictions only

Length 227 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD1Q96S90 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC22.38■■□□□ 1.17
LYSMD1Q96S90 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC22.38■■□□□ 1.17
LYSMD1Q96S90 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
LYSMD1Q96S90 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC22.38■■□□□ 1.17
LYSMD1Q96S90 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC22.38■■□□□ 1.17
LYSMD1Q96S90 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
LYSMD1Q96S90 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC22.37■■□□□ 1.17
LYSMD1Q96S90 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC22.37■■□□□ 1.17
LYSMD1Q96S90 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC22.37■■□□□ 1.17
LYSMD1Q96S90 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC22.37■■□□□ 1.17
LYSMD1Q96S90 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC22.37■■□□□ 1.17
LYSMD1Q96S90 AL353803.4-201ENST00000565882 1934 ntBASIC22.37■■□□□ 1.17
LYSMD1Q96S90 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
LYSMD1Q96S90 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
LYSMD1Q96S90 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
LYSMD1Q96S90 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC22.36■■□□□ 1.17
LYSMD1Q96S90 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
LYSMD1Q96S90 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC22.36■■□□□ 1.17
LYSMD1Q96S90 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC22.36■■□□□ 1.17
LYSMD1Q96S90 AC006455.2-201ENST00000429931 906 ntBASIC22.36■■□□□ 1.17
LYSMD1Q96S90 AL499627.2-201ENST00000606283 725 ntBASIC22.36■■□□□ 1.17
LYSMD1Q96S90 AL138724.1-201ENST00000606771 1088 ntBASIC22.36■■□□□ 1.17
LYSMD1Q96S90 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
LYSMD1Q96S90 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
LYSMD1Q96S90 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
LYSMD1Q96S90 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
LYSMD1Q96S90 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
LYSMD1Q96S90 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC22.35■■□□□ 1.17
LYSMD1Q96S90 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
LYSMD1Q96S90 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
LYSMD1Q96S90 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC22.35■■□□□ 1.17
LYSMD1Q96S90 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC22.35■■□□□ 1.17
LYSMD1Q96S90 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC22.35■■□□□ 1.17
LYSMD1Q96S90 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC22.34■■□□□ 1.17
LYSMD1Q96S90 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
LYSMD1Q96S90 SYT6-210ENST00000641643 1587 ntBASIC22.34■■□□□ 1.17
LYSMD1Q96S90 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC22.34■■□□□ 1.17
LYSMD1Q96S90 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
LYSMD1Q96S90 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
LYSMD1Q96S90 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC22.34■■□□□ 1.17
LYSMD1Q96S90 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC22.34■■□□□ 1.17
LYSMD1Q96S90 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC22.34■■□□□ 1.17
LYSMD1Q96S90 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC22.34■■□□□ 1.17
LYSMD1Q96S90 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC22.34■■□□□ 1.17
LYSMD1Q96S90 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC22.34■■□□□ 1.17
LYSMD1Q96S90 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC22.34■■□□□ 1.17
LYSMD1Q96S90 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC22.34■■□□□ 1.17
LYSMD1Q96S90 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC22.34■■□□□ 1.17
LYSMD1Q96S90 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC22.34■■□□□ 1.17
LYSMD1Q96S90 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
LYSMD1Q96S90 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
LYSMD1Q96S90 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC22.33■■□□□ 1.17
LYSMD1Q96S90 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
LYSMD1Q96S90 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
LYSMD1Q96S90 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
LYSMD1Q96S90 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC22.33■■□□□ 1.17
LYSMD1Q96S90 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC22.33■■□□□ 1.17
LYSMD1Q96S90 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC22.33■■□□□ 1.16
LYSMD1Q96S90 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC22.33■■□□□ 1.16
LYSMD1Q96S90 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
LYSMD1Q96S90 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC22.33■■□□□ 1.16
LYSMD1Q96S90 DUSP8P3-201ENST00000399571 1760 ntBASIC22.33■■□□□ 1.16
LYSMD1Q96S90 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
LYSMD1Q96S90 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC22.32■■□□□ 1.16
LYSMD1Q96S90 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC22.32■■□□□ 1.16
LYSMD1Q96S90 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC22.32■■□□□ 1.16
LYSMD1Q96S90 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
LYSMD1Q96S90 SERBP1P1-201ENST00000396021 1160 ntBASIC22.32■■□□□ 1.16
LYSMD1Q96S90 MIR3181-201ENST00000578512 73 ntBASIC22.32■■□□□ 1.16
LYSMD1Q96S90 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC22.32■■□□□ 1.16
LYSMD1Q96S90 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC22.32■■□□□ 1.16
LYSMD1Q96S90 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC22.32■■□□□ 1.16
LYSMD1Q96S90 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
LYSMD1Q96S90 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC22.32■■□□□ 1.16
LYSMD1Q96S90 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC22.32■■□□□ 1.16
LYSMD1Q96S90 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC22.32■■□□□ 1.16
LYSMD1Q96S90 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC22.32■■□□□ 1.16
LYSMD1Q96S90 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC22.31■■□□□ 1.16
LYSMD1Q96S90 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC22.31■■□□□ 1.16
LYSMD1Q96S90 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
LYSMD1Q96S90 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC22.31■■□□□ 1.16
LYSMD1Q96S90 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
LYSMD1Q96S90 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC22.31■■□□□ 1.16
LYSMD1Q96S90 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC22.31■■□□□ 1.16
LYSMD1Q96S90 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
LYSMD1Q96S90 PTCHD3P2-201ENST00000424937 1205 ntBASIC22.31■■□□□ 1.16
LYSMD1Q96S90 AC011298.3-201ENST00000615796 283 ntBASIC22.31■■□□□ 1.16
LYSMD1Q96S90 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC22.31■■□□□ 1.16
LYSMD1Q96S90 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
LYSMD1Q96S90 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC22.31■■□□□ 1.16
LYSMD1Q96S90 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
LYSMD1Q96S90 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
LYSMD1Q96S90 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
LYSMD1Q96S90 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
LYSMD1Q96S90 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
LYSMD1Q96S90 UNC93B3-201ENST00000308076 687 ntBASIC22.3■■□□□ 1.16
LYSMD1Q96S90 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC22.3■■□□□ 1.16
LYSMD1Q96S90 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC22.3■■□□□ 1.16
LYSMD1Q96S90 pRNA.6-201ENST00000610482 90 ntBASIC22.3■■□□□ 1.16
LYSMD1Q96S90 pRNA.5-201ENST00000612139 90 ntBASIC22.3■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms