Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC23.28■■□□□ 1.32
TTC28Q96AY4 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC23.28■■□□□ 1.32
TTC28Q96AY4 LINC01003-201ENST00000564834 1764 ntBASIC23.28■■□□□ 1.32
TTC28Q96AY4 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC23.28■■□□□ 1.32
TTC28Q96AY4 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC23.28■■□□□ 1.32
TTC28Q96AY4 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC23.28■■□□□ 1.32
TTC28Q96AY4 RNA5SP413-201ENST00000516373 109 ntBASIC23.28■■□□□ 1.32
TTC28Q96AY4 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
TTC28Q96AY4 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC23.28■■□□□ 1.32
TTC28Q96AY4 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
TTC28Q96AY4 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC23.27■■□□□ 1.32
TTC28Q96AY4 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
TTC28Q96AY4 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
TTC28Q96AY4 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC23.27■■□□□ 1.32
TTC28Q96AY4 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC23.27■■□□□ 1.32
TTC28Q96AY4 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC23.27■■□□□ 1.32
TTC28Q96AY4 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
TTC28Q96AY4 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC23.27■■□□□ 1.32
TTC28Q96AY4 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC23.27■■□□□ 1.32
TTC28Q96AY4 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
TTC28Q96AY4 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
TTC28Q96AY4 AC211429.1-201ENST00000415277 523 ntBASIC23.27■■□□□ 1.32
TTC28Q96AY4 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
TTC28Q96AY4 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
TTC28Q96AY4 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
TTC28Q96AY4 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC23.27■■□□□ 1.31
TTC28Q96AY4 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC23.26■■□□□ 1.31
TTC28Q96AY4 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
TTC28Q96AY4 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
TTC28Q96AY4 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC23.26■■□□□ 1.31
TTC28Q96AY4 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
TTC28Q96AY4 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
TTC28Q96AY4 MMAB-206ENST00000540016 945 ntTSL 3 BASIC23.26■■□□□ 1.31
TTC28Q96AY4 USP36-216ENST00000589424 970 ntTSL 5 BASIC23.26■■□□□ 1.31
TTC28Q96AY4 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC23.26■■□□□ 1.31
TTC28Q96AY4 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
TTC28Q96AY4 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
TTC28Q96AY4 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC23.25■■□□□ 1.31
TTC28Q96AY4 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC23.25■■□□□ 1.31
TTC28Q96AY4 DRD5P2-201ENST00000421395 2012 ntBASIC23.25■■□□□ 1.31
TTC28Q96AY4 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
TTC28Q96AY4 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
TTC28Q96AY4 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
TTC28Q96AY4 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC23.24■■□□□ 1.31
TTC28Q96AY4 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC23.24■■□□□ 1.31
TTC28Q96AY4 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC23.24■■□□□ 1.31
TTC28Q96AY4 AC133041.1-202ENST00000642053 222 ntBASIC23.24■■□□□ 1.31
TTC28Q96AY4 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
TTC28Q96AY4 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
TTC28Q96AY4 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
TTC28Q96AY4 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC23.24■■□□□ 1.31
TTC28Q96AY4 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
TTC28Q96AY4 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
TTC28Q96AY4 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
TTC28Q96AY4 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC23.24■■□□□ 1.31
TTC28Q96AY4 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC23.24■■□□□ 1.31
TTC28Q96AY4 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC23.24■■□□□ 1.31
TTC28Q96AY4 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC23.24■■□□□ 1.31
TTC28Q96AY4 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC23.24■■□□□ 1.31
TTC28Q96AY4 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
TTC28Q96AY4 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
TTC28Q96AY4 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC23.23■■□□□ 1.31
TTC28Q96AY4 AC007322.1-201ENST00000426983 750 ntBASIC23.23■■□□□ 1.31
TTC28Q96AY4 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
TTC28Q96AY4 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
TTC28Q96AY4 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC23.23■■□□□ 1.31
TTC28Q96AY4 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
TTC28Q96AY4 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC23.23■■□□□ 1.31
TTC28Q96AY4 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
TTC28Q96AY4 DUX4L16-201ENST00000555130 1264 ntBASIC23.23■■□□□ 1.31
TTC28Q96AY4 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
TTC28Q96AY4 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
TTC28Q96AY4 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC23.22■■□□□ 1.31
TTC28Q96AY4 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC23.22■■□□□ 1.31
TTC28Q96AY4 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC23.22■■□□□ 1.31
TTC28Q96AY4 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC23.22■■□□□ 1.31
TTC28Q96AY4 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC23.21■■□□□ 1.31
TTC28Q96AY4 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC23.21■■□□□ 1.31
TTC28Q96AY4 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC23.21■■□□□ 1.31
TTC28Q96AY4 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC23.21■■□□□ 1.31
TTC28Q96AY4 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
TTC28Q96AY4 AC142472.1-201ENST00000612013 1741 ntBASIC23.21■■□□□ 1.31
TTC28Q96AY4 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
TTC28Q96AY4 AC073912.3-201ENST00000624414 853 ntBASIC23.2■■□□□ 1.3
TTC28Q96AY4 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
TTC28Q96AY4 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC23.2■■□□□ 1.3
TTC28Q96AY4 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
TTC28Q96AY4 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
TTC28Q96AY4 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC23.19■■□□□ 1.3
TTC28Q96AY4 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC23.19■■□□□ 1.3
TTC28Q96AY4 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC23.19■■□□□ 1.3
TTC28Q96AY4 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
TTC28Q96AY4 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
TTC28Q96AY4 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
TTC28Q96AY4 MFF-208ENST00000409616 1247 ntTSL 5 BASIC23.19■■□□□ 1.3
TTC28Q96AY4 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
TTC28Q96AY4 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
TTC28Q96AY4 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC23.19■■□□□ 1.3
TTC28Q96AY4 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
TTC28Q96AY4 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms