Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC22.95■■□□□ 1.26
SHROOM3Q8TF72 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC22.95■■□□□ 1.26
SHROOM3Q8TF72 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
SHROOM3Q8TF72 ASB1-202ENST00000409297 878 ntTSL 5 BASIC22.95■■□□□ 1.26
SHROOM3Q8TF72 MIR3621-201ENST00000580529 85 ntBASIC22.95■■□□□ 1.26
SHROOM3Q8TF72 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC22.95■■□□□ 1.26
SHROOM3Q8TF72 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
SHROOM3Q8TF72 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC22.95■■□□□ 1.26
SHROOM3Q8TF72 MIR4466-201ENST00000606121 54 ntBASIC22.94■■□□□ 1.26
SHROOM3Q8TF72 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
SHROOM3Q8TF72 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
SHROOM3Q8TF72 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC22.94■■□□□ 1.26
SHROOM3Q8TF72 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC22.94■■□□□ 1.26
SHROOM3Q8TF72 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC22.94■■□□□ 1.26
SHROOM3Q8TF72 TRIR-202ENST00000588213 841 ntTSL 3 BASIC22.94■■□□□ 1.26
SHROOM3Q8TF72 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC22.93■■□□□ 1.26
SHROOM3Q8TF72 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC22.93■■□□□ 1.26
SHROOM3Q8TF72 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
SHROOM3Q8TF72 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
SHROOM3Q8TF72 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC22.93■■□□□ 1.26
SHROOM3Q8TF72 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
SHROOM3Q8TF72 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
SHROOM3Q8TF72 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
SHROOM3Q8TF72 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC22.92■■□□□ 1.26
SHROOM3Q8TF72 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
SHROOM3Q8TF72 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC22.92■■□□□ 1.26
SHROOM3Q8TF72 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
SHROOM3Q8TF72 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
SHROOM3Q8TF72 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC22.92■■□□□ 1.26
SHROOM3Q8TF72 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC22.92■■□□□ 1.26
SHROOM3Q8TF72 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
SHROOM3Q8TF72 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC22.92■■□□□ 1.26
SHROOM3Q8TF72 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC22.92■■□□□ 1.26
SHROOM3Q8TF72 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
SHROOM3Q8TF72 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC22.92■■□□□ 1.26
SHROOM3Q8TF72 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
SHROOM3Q8TF72 AC009102.2-201ENST00000606772 1639 ntBASIC22.92■■□□□ 1.26
SHROOM3Q8TF72 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC22.91■■□□□ 1.26
SHROOM3Q8TF72 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC22.91■■□□□ 1.26
SHROOM3Q8TF72 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC22.91■■□□□ 1.26
SHROOM3Q8TF72 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
SHROOM3Q8TF72 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC22.91■■□□□ 1.26
SHROOM3Q8TF72 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC22.91■■□□□ 1.26
SHROOM3Q8TF72 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC22.91■■□□□ 1.26
SHROOM3Q8TF72 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
SHROOM3Q8TF72 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
SHROOM3Q8TF72 AL356740.2-201ENST00000601559 647 ntBASIC22.9■■□□□ 1.26
SHROOM3Q8TF72 AC068473.5-201ENST00000616428 2072 ntBASIC22.9■■□□□ 1.26
SHROOM3Q8TF72 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
SHROOM3Q8TF72 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC22.9■■□□□ 1.26
SHROOM3Q8TF72 AC092666.2-201ENST00000613287 246 ntBASIC22.9■■□□□ 1.26
SHROOM3Q8TF72 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
SHROOM3Q8TF72 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC22.9■■□□□ 1.26
SHROOM3Q8TF72 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC22.9■■□□□ 1.26
SHROOM3Q8TF72 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC22.89■■□□□ 1.26
SHROOM3Q8TF72 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC22.89■■□□□ 1.26
SHROOM3Q8TF72 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC22.89■■□□□ 1.26
SHROOM3Q8TF72 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC22.89■■□□□ 1.26
SHROOM3Q8TF72 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
SHROOM3Q8TF72 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
SHROOM3Q8TF72 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
SHROOM3Q8TF72 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC22.89■■□□□ 1.25
SHROOM3Q8TF72 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
SHROOM3Q8TF72 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC22.88■■□□□ 1.25
SHROOM3Q8TF72 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
SHROOM3Q8TF72 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC22.88■■□□□ 1.25
SHROOM3Q8TF72 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC22.88■■□□□ 1.25
SHROOM3Q8TF72 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC22.88■■□□□ 1.25
SHROOM3Q8TF72 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
SHROOM3Q8TF72 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC22.88■■□□□ 1.25
SHROOM3Q8TF72 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
SHROOM3Q8TF72 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
SHROOM3Q8TF72 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC22.87■■□□□ 1.25
SHROOM3Q8TF72 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
SHROOM3Q8TF72 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
SHROOM3Q8TF72 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC22.87■■□□□ 1.25
SHROOM3Q8TF72 LTK-203ENST00000453182 2412 ntTSL 2 BASIC22.87■■□□□ 1.25
SHROOM3Q8TF72 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC22.87■■□□□ 1.25
SHROOM3Q8TF72 AC133561.1-201ENST00000568600 2415 ntBASIC22.86■■□□□ 1.25
SHROOM3Q8TF72 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
SHROOM3Q8TF72 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC22.86■■□□□ 1.25
SHROOM3Q8TF72 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
SHROOM3Q8TF72 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC22.86■■□□□ 1.25
SHROOM3Q8TF72 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC22.86■■□□□ 1.25
SHROOM3Q8TF72 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
SHROOM3Q8TF72 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC22.86■■□□□ 1.25
SHROOM3Q8TF72 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC22.86■■□□□ 1.25
SHROOM3Q8TF72 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC22.86■■□□□ 1.25
SHROOM3Q8TF72 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC22.85■■□□□ 1.25
SHROOM3Q8TF72 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC22.85■■□□□ 1.25
SHROOM3Q8TF72 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
SHROOM3Q8TF72 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC22.85■■□□□ 1.25
SHROOM3Q8TF72 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC22.85■■□□□ 1.25
SHROOM3Q8TF72 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC22.85■■□□□ 1.25
SHROOM3Q8TF72 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC22.85■■□□□ 1.25
SHROOM3Q8TF72 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
SHROOM3Q8TF72 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC22.85■■□□□ 1.25
SHROOM3Q8TF72 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC22.85■■□□□ 1.25
SHROOM3Q8TF72 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC22.85■■□□□ 1.25
SHROOM3Q8TF72 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC22.85■■□□□ 1.25
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms