Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
LMX1AQ8TE12 AC020928.2-201ENST00000588717 2197 ntBASIC21.91■■□□□ 1.1
LMX1AQ8TE12 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC21.91■■□□□ 1.1
LMX1AQ8TE12 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
LMX1AQ8TE12 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
LMX1AQ8TE12 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC21.91■■□□□ 1.1
LMX1AQ8TE12 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
LMX1AQ8TE12 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
LMX1AQ8TE12 AL162430.1-201ENST00000480705 870 ntBASIC21.91■■□□□ 1.1
LMX1AQ8TE12 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC21.91■■□□□ 1.1
LMX1AQ8TE12 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC21.91■■□□□ 1.1
LMX1AQ8TE12 EED-207ENST00000528180 1745 ntTSL 5 BASIC21.91■■□□□ 1.1
LMX1AQ8TE12 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
LMX1AQ8TE12 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
LMX1AQ8TE12 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
LMX1AQ8TE12 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC21.9■■□□□ 1.1
LMX1AQ8TE12 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
LMX1AQ8TE12 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC21.9■■□□□ 1.1
LMX1AQ8TE12 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC21.9■■□□□ 1.1
LMX1AQ8TE12 AK1-201ENST00000223836 736 ntTSL 3 BASIC21.9■■□□□ 1.1
LMX1AQ8TE12 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC21.9■■□□□ 1.1
LMX1AQ8TE12 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC21.9■■□□□ 1.1
LMX1AQ8TE12 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
LMX1AQ8TE12 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
LMX1AQ8TE12 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
LMX1AQ8TE12 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC21.89■■□□□ 1.1
LMX1AQ8TE12 FP325331.1-202ENST00000623531 1380 ntBASIC21.89■■□□□ 1.1
LMX1AQ8TE12 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC21.89■■□□□ 1.1
LMX1AQ8TE12 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC21.89■■□□□ 1.1
LMX1AQ8TE12 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
LMX1AQ8TE12 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
LMX1AQ8TE12 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC21.89■■□□□ 1.09
LMX1AQ8TE12 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
LMX1AQ8TE12 AICDA-202ENST00000537228 667 ntTSL 5 BASIC21.89■■□□□ 1.09
LMX1AQ8TE12 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC21.89■■□□□ 1.09
LMX1AQ8TE12 AL499627.2-201ENST00000606283 725 ntBASIC21.89■■□□□ 1.09
LMX1AQ8TE12 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC21.89■■□□□ 1.09
LMX1AQ8TE12 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
LMX1AQ8TE12 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC21.88■■□□□ 1.09
LMX1AQ8TE12 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
LMX1AQ8TE12 DUX4L4-201ENST00000566884 1269 ntBASIC21.88■■□□□ 1.09
LMX1AQ8TE12 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
LMX1AQ8TE12 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC21.88■■□□□ 1.09
LMX1AQ8TE12 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
LMX1AQ8TE12 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
LMX1AQ8TE12 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC21.87■■□□□ 1.09
LMX1AQ8TE12 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
LMX1AQ8TE12 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
LMX1AQ8TE12 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC21.87■■□□□ 1.09
LMX1AQ8TE12 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
LMX1AQ8TE12 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
LMX1AQ8TE12 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC21.87■■□□□ 1.09
LMX1AQ8TE12 NME4-202ENST00000382940 766 ntTSL 3 BASIC21.87■■□□□ 1.09
LMX1AQ8TE12 NME4-211ENST00000620944 1193 ntTSL 2 BASIC21.87■■□□□ 1.09
LMX1AQ8TE12 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC21.87■■□□□ 1.09
LMX1AQ8TE12 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
LMX1AQ8TE12 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC21.87■■□□□ 1.09
LMX1AQ8TE12 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
LMX1AQ8TE12 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC21.86■■□□□ 1.09
LMX1AQ8TE12 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
LMX1AQ8TE12 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
LMX1AQ8TE12 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
LMX1AQ8TE12 IGHV3-19-201ENST00000521488 291 ntBASIC21.86■■□□□ 1.09
LMX1AQ8TE12 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC21.86■■□□□ 1.09
LMX1AQ8TE12 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
LMX1AQ8TE12 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC21.86■■□□□ 1.09
LMX1AQ8TE12 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
LMX1AQ8TE12 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
LMX1AQ8TE12 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
LMX1AQ8TE12 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
LMX1AQ8TE12 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC21.85■■□□□ 1.09
LMX1AQ8TE12 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
LMX1AQ8TE12 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
LMX1AQ8TE12 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC21.85■■□□□ 1.09
LMX1AQ8TE12 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
LMX1AQ8TE12 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC21.85■■□□□ 1.09
LMX1AQ8TE12 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC21.85■■□□□ 1.09
LMX1AQ8TE12 AC010525.1-201ENST00000585559 441 ntBASIC21.85■■□□□ 1.09
LMX1AQ8TE12 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC21.85■■□□□ 1.09
LMX1AQ8TE12 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC21.85■■□□□ 1.09
LMX1AQ8TE12 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
LMX1AQ8TE12 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
LMX1AQ8TE12 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
LMX1AQ8TE12 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
LMX1AQ8TE12 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
LMX1AQ8TE12 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
LMX1AQ8TE12 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
LMX1AQ8TE12 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
LMX1AQ8TE12 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
LMX1AQ8TE12 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC21.84■■□□□ 1.09
LMX1AQ8TE12 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC21.84■■□□□ 1.09
LMX1AQ8TE12 AC144652.1-201ENST00000609974 1624 ntBASIC21.84■■□□□ 1.09
LMX1AQ8TE12 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC21.84■■□□□ 1.09
LMX1AQ8TE12 LINC01529-204ENST00000636474 1715 ntBASIC21.84■■□□□ 1.09
LMX1AQ8TE12 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC21.84■■□□□ 1.09
LMX1AQ8TE12 GLI3-203ENST00000437480 451 ntTSL 2 BASIC21.84■■□□□ 1.09
LMX1AQ8TE12 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC21.84■■□□□ 1.09
LMX1AQ8TE12 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
LMX1AQ8TE12 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC21.84■■□□□ 1.09
LMX1AQ8TE12 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC21.84■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms