Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 AC010525.1-201ENST00000585559 441 ntBASIC23.16■■□□□ 1.3
SLC44A3Q8N4M1 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
SLC44A3Q8N4M1 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
SLC44A3Q8N4M1 HLA-L-211ENST00000482052 1765 ntBASIC23.16■■□□□ 1.3
SLC44A3Q8N4M1 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
SLC44A3Q8N4M1 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC23.15■■□□□ 1.3
SLC44A3Q8N4M1 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
SLC44A3Q8N4M1 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC23.15■■□□□ 1.3
SLC44A3Q8N4M1 LHPP-203ENST00000392757 840 ntTSL 3 BASIC23.15■■□□□ 1.3
SLC44A3Q8N4M1 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
SLC44A3Q8N4M1 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC23.15■■□□□ 1.3
SLC44A3Q8N4M1 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC23.15■■□□□ 1.3
SLC44A3Q8N4M1 AL499627.2-201ENST00000606283 725 ntBASIC23.15■■□□□ 1.3
SLC44A3Q8N4M1 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC23.15■■□□□ 1.3
SLC44A3Q8N4M1 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC23.14■■□□□ 1.3
SLC44A3Q8N4M1 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
SLC44A3Q8N4M1 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
SLC44A3Q8N4M1 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
SLC44A3Q8N4M1 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC23.14■■□□□ 1.29
SLC44A3Q8N4M1 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
SLC44A3Q8N4M1 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
SLC44A3Q8N4M1 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
SLC44A3Q8N4M1 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC23.14■■□□□ 1.29
SLC44A3Q8N4M1 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC23.14■■□□□ 1.29
SLC44A3Q8N4M1 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC23.14■■□□□ 1.29
SLC44A3Q8N4M1 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC23.14■■□□□ 1.29
SLC44A3Q8N4M1 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC23.13■■□□□ 1.29
SLC44A3Q8N4M1 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
SLC44A3Q8N4M1 NT5C3AP1-201ENST00000394500 1012 ntBASIC23.13■■□□□ 1.29
SLC44A3Q8N4M1 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC23.13■■□□□ 1.29
SLC44A3Q8N4M1 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC23.13■■□□□ 1.29
SLC44A3Q8N4M1 AC091060.1-201ENST00000623524 1766 ntBASIC23.13■■□□□ 1.29
SLC44A3Q8N4M1 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
SLC44A3Q8N4M1 MPST-204ENST00000404393 1329 ntTSL 5 BASIC23.12■■□□□ 1.29
SLC44A3Q8N4M1 EI24-204ENST00000527235 1625 ntTSL 5 BASIC23.12■■□□□ 1.29
SLC44A3Q8N4M1 DUSP8P4-201ENST00000399538 1761 ntBASIC23.12■■□□□ 1.29
SLC44A3Q8N4M1 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
SLC44A3Q8N4M1 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
SLC44A3Q8N4M1 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
SLC44A3Q8N4M1 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
SLC44A3Q8N4M1 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
SLC44A3Q8N4M1 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
SLC44A3Q8N4M1 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC23.11■■□□□ 1.29
SLC44A3Q8N4M1 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC23.11■■□□□ 1.29
SLC44A3Q8N4M1 TK2-208ENST00000545043 1120 ntTSL 2 BASIC23.11■■□□□ 1.29
SLC44A3Q8N4M1 AC080038.1-201ENST00000611274 1154 ntBASIC23.11■■□□□ 1.29
SLC44A3Q8N4M1 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC23.11■■□□□ 1.29
SLC44A3Q8N4M1 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
SLC44A3Q8N4M1 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC23.1■■□□□ 1.29
SLC44A3Q8N4M1 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC23.1■■□□□ 1.29
SLC44A3Q8N4M1 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC23.1■■□□□ 1.29
SLC44A3Q8N4M1 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC23.1■■□□□ 1.29
SLC44A3Q8N4M1 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC23.1■■□□□ 1.29
SLC44A3Q8N4M1 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC23.1■■□□□ 1.29
SLC44A3Q8N4M1 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
SLC44A3Q8N4M1 OR2I1P-207ENST00000453522 948 ntBASIC23.1■■□□□ 1.29
SLC44A3Q8N4M1 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC23.1■■□□□ 1.29
SLC44A3Q8N4M1 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
SLC44A3Q8N4M1 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
SLC44A3Q8N4M1 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC23.1■■□□□ 1.29
SLC44A3Q8N4M1 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
SLC44A3Q8N4M1 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC23.09■■□□□ 1.29
SLC44A3Q8N4M1 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
SLC44A3Q8N4M1 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC23.09■■□□□ 1.29
SLC44A3Q8N4M1 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
SLC44A3Q8N4M1 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
SLC44A3Q8N4M1 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
SLC44A3Q8N4M1 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
SLC44A3Q8N4M1 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC23.09■■□□□ 1.29
SLC44A3Q8N4M1 AL121749.1-202ENST00000609313 2153 ntBASIC23.08■■□□□ 1.29
SLC44A3Q8N4M1 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
SLC44A3Q8N4M1 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
SLC44A3Q8N4M1 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC23.08■■□□□ 1.29
SLC44A3Q8N4M1 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC23.08■■□□□ 1.29
SLC44A3Q8N4M1 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
SLC44A3Q8N4M1 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC23.08■■□□□ 1.29
SLC44A3Q8N4M1 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC23.08■■□□□ 1.29
SLC44A3Q8N4M1 AP005435.1-201ENST00000529293 1178 ntBASIC23.08■■□□□ 1.29
SLC44A3Q8N4M1 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC23.08■■□□□ 1.29
SLC44A3Q8N4M1 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC23.08■■□□□ 1.29
SLC44A3Q8N4M1 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.29
SLC44A3Q8N4M1 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
SLC44A3Q8N4M1 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
SLC44A3Q8N4M1 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC23.07■■□□□ 1.28
SLC44A3Q8N4M1 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
SLC44A3Q8N4M1 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
SLC44A3Q8N4M1 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC23.07■■□□□ 1.28
SLC44A3Q8N4M1 AC006015.1-201ENST00000429970 570 ntBASIC23.07■■□□□ 1.28
SLC44A3Q8N4M1 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC23.07■■□□□ 1.28
SLC44A3Q8N4M1 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC23.07■■□□□ 1.28
SLC44A3Q8N4M1 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC23.06■■□□□ 1.28
SLC44A3Q8N4M1 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC23.06■■□□□ 1.28
SLC44A3Q8N4M1 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC23.06■■□□□ 1.28
SLC44A3Q8N4M1 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC23.06■■□□□ 1.28
SLC44A3Q8N4M1 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
SLC44A3Q8N4M1 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC23.06■■□□□ 1.28
SLC44A3Q8N4M1 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC23.06■■□□□ 1.28
SLC44A3Q8N4M1 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC23.06■■□□□ 1.28
SLC44A3Q8N4M1 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC23.06■■□□□ 1.28
SLC44A3Q8N4M1 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC23.06■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms