Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
DEPDC4Q8N2C3 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC20.71■□□□□ 0.91
DEPDC4Q8N2C3 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
DEPDC4Q8N2C3 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC20.71■□□□□ 0.91
DEPDC4Q8N2C3 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.91
DEPDC4Q8N2C3 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
DEPDC4Q8N2C3 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC20.7■□□□□ 0.91
DEPDC4Q8N2C3 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
DEPDC4Q8N2C3 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC20.7■□□□□ 0.9
DEPDC4Q8N2C3 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC20.7■□□□□ 0.9
DEPDC4Q8N2C3 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC20.7■□□□□ 0.9
DEPDC4Q8N2C3 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
DEPDC4Q8N2C3 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
DEPDC4Q8N2C3 AC103834.1-201ENST00000520383 144 ntBASIC20.7■□□□□ 0.9
DEPDC4Q8N2C3 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC20.7■□□□□ 0.9
DEPDC4Q8N2C3 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
DEPDC4Q8N2C3 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
DEPDC4Q8N2C3 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
DEPDC4Q8N2C3 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
DEPDC4Q8N2C3 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
DEPDC4Q8N2C3 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
DEPDC4Q8N2C3 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC20.69■□□□□ 0.9
DEPDC4Q8N2C3 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
DEPDC4Q8N2C3 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
DEPDC4Q8N2C3 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
DEPDC4Q8N2C3 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
DEPDC4Q8N2C3 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
DEPDC4Q8N2C3 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC20.69■□□□□ 0.9
DEPDC4Q8N2C3 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
DEPDC4Q8N2C3 AL031848.2-201ENST00000607670 837 ntBASIC20.69■□□□□ 0.9
DEPDC4Q8N2C3 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
DEPDC4Q8N2C3 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC20.69■□□□□ 0.9
DEPDC4Q8N2C3 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC20.69■□□□□ 0.9
DEPDC4Q8N2C3 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
DEPDC4Q8N2C3 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
DEPDC4Q8N2C3 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
DEPDC4Q8N2C3 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
DEPDC4Q8N2C3 AL024507.2-201ENST00000606070 2574 ntBASIC20.68■□□□□ 0.9
DEPDC4Q8N2C3 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
DEPDC4Q8N2C3 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
DEPDC4Q8N2C3 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
DEPDC4Q8N2C3 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
DEPDC4Q8N2C3 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
DEPDC4Q8N2C3 AL451085.2-201ENST00000605085 799 ntBASIC20.68■□□□□ 0.9
DEPDC4Q8N2C3 AL035685.1-201ENST00000636663 812 ntBASIC20.68■□□□□ 0.9
DEPDC4Q8N2C3 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
DEPDC4Q8N2C3 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
DEPDC4Q8N2C3 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
DEPDC4Q8N2C3 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
DEPDC4Q8N2C3 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
DEPDC4Q8N2C3 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
DEPDC4Q8N2C3 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
DEPDC4Q8N2C3 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
DEPDC4Q8N2C3 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
DEPDC4Q8N2C3 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
DEPDC4Q8N2C3 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
DEPDC4Q8N2C3 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
DEPDC4Q8N2C3 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
DEPDC4Q8N2C3 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
DEPDC4Q8N2C3 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
DEPDC4Q8N2C3 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
DEPDC4Q8N2C3 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
DEPDC4Q8N2C3 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
DEPDC4Q8N2C3 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
DEPDC4Q8N2C3 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
DEPDC4Q8N2C3 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC20.67■□□□□ 0.9
DEPDC4Q8N2C3 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
DEPDC4Q8N2C3 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
DEPDC4Q8N2C3 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
DEPDC4Q8N2C3 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC20.66■□□□□ 0.9
DEPDC4Q8N2C3 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
DEPDC4Q8N2C3 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC20.66■□□□□ 0.9
DEPDC4Q8N2C3 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
DEPDC4Q8N2C3 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC20.66■□□□□ 0.9
DEPDC4Q8N2C3 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
DEPDC4Q8N2C3 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
DEPDC4Q8N2C3 AC090877.2-201ENST00000558441 1738 ntBASIC20.66■□□□□ 0.9
DEPDC4Q8N2C3 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC20.66■□□□□ 0.9
DEPDC4Q8N2C3 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
DEPDC4Q8N2C3 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
DEPDC4Q8N2C3 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
DEPDC4Q8N2C3 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
DEPDC4Q8N2C3 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
DEPDC4Q8N2C3 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
DEPDC4Q8N2C3 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
DEPDC4Q8N2C3 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC20.65■□□□□ 0.9
DEPDC4Q8N2C3 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC20.65■□□□□ 0.9
DEPDC4Q8N2C3 ESRRAP2-201ENST00000418437 1549 ntBASIC20.65■□□□□ 0.9
DEPDC4Q8N2C3 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC20.65■□□□□ 0.9
DEPDC4Q8N2C3 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC20.65■□□□□ 0.9
DEPDC4Q8N2C3 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
DEPDC4Q8N2C3 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC20.65■□□□□ 0.9
DEPDC4Q8N2C3 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
DEPDC4Q8N2C3 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
DEPDC4Q8N2C3 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
DEPDC4Q8N2C3 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
DEPDC4Q8N2C3 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
DEPDC4Q8N2C3 AC242852.2-201ENST00000615738 1807 ntBASIC20.64■□□□□ 0.9
DEPDC4Q8N2C3 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
DEPDC4Q8N2C3 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms