Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
NUP54Q7Z3B4 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
NUP54Q7Z3B4 NKILA-201ENST00000613231 537 ntTSL 4 BASIC20.67■□□□□ 0.9
NUP54Q7Z3B4 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC20.67■□□□□ 0.9
NUP54Q7Z3B4 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
NUP54Q7Z3B4 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
NUP54Q7Z3B4 DUSP8P5-201ENST00000422884 1815 ntBASIC20.67■□□□□ 0.9
NUP54Q7Z3B4 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
NUP54Q7Z3B4 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
NUP54Q7Z3B4 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
NUP54Q7Z3B4 AC241377.3-202ENST00000626088 1088 ntBASIC20.66■□□□□ 0.9
NUP54Q7Z3B4 AC241585.3-202ENST00000628937 1088 ntBASIC20.66■□□□□ 0.9
NUP54Q7Z3B4 AC245100.8-202ENST00000629247 1058 ntBASIC20.66■□□□□ 0.9
NUP54Q7Z3B4 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC20.66■□□□□ 0.9
NUP54Q7Z3B4 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
NUP54Q7Z3B4 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC20.66■□□□□ 0.9
NUP54Q7Z3B4 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
NUP54Q7Z3B4 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
NUP54Q7Z3B4 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
NUP54Q7Z3B4 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
NUP54Q7Z3B4 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
NUP54Q7Z3B4 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
NUP54Q7Z3B4 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
NUP54Q7Z3B4 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC20.65■□□□□ 0.9
NUP54Q7Z3B4 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC20.65■□□□□ 0.9
NUP54Q7Z3B4 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
NUP54Q7Z3B4 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
NUP54Q7Z3B4 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
NUP54Q7Z3B4 FP325331.1-202ENST00000623531 1380 ntBASIC20.65■□□□□ 0.9
NUP54Q7Z3B4 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
NUP54Q7Z3B4 AC092171.4-201ENST00000609130 632 ntBASIC20.65■□□□□ 0.9
NUP54Q7Z3B4 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC20.65■□□□□ 0.9
NUP54Q7Z3B4 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC20.65■□□□□ 0.9
NUP54Q7Z3B4 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
NUP54Q7Z3B4 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC20.64■□□□□ 0.9
NUP54Q7Z3B4 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
NUP54Q7Z3B4 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC20.64■□□□□ 0.89
NUP54Q7Z3B4 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
NUP54Q7Z3B4 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
NUP54Q7Z3B4 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NUP54Q7Z3B4 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC20.63■□□□□ 0.89
NUP54Q7Z3B4 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC20.63■□□□□ 0.89
NUP54Q7Z3B4 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NUP54Q7Z3B4 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
NUP54Q7Z3B4 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
NUP54Q7Z3B4 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
NUP54Q7Z3B4 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NUP54Q7Z3B4 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
NUP54Q7Z3B4 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NUP54Q7Z3B4 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC20.62■□□□□ 0.89
NUP54Q7Z3B4 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC20.62■□□□□ 0.89
NUP54Q7Z3B4 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
NUP54Q7Z3B4 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
NUP54Q7Z3B4 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
NUP54Q7Z3B4 VGF-203ENST00000611537 1622 ntTSL 5 BASIC20.62■□□□□ 0.89
NUP54Q7Z3B4 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NUP54Q7Z3B4 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
NUP54Q7Z3B4 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
NUP54Q7Z3B4 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
NUP54Q7Z3B4 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC20.62■□□□□ 0.89
NUP54Q7Z3B4 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
NUP54Q7Z3B4 AC144652.1-201ENST00000609974 1624 ntBASIC20.61■□□□□ 0.89
NUP54Q7Z3B4 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
NUP54Q7Z3B4 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC20.61■□□□□ 0.89
NUP54Q7Z3B4 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
NUP54Q7Z3B4 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
NUP54Q7Z3B4 ASB1-202ENST00000409297 878 ntTSL 5 BASIC20.61■□□□□ 0.89
NUP54Q7Z3B4 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC20.61■□□□□ 0.89
NUP54Q7Z3B4 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC20.61■□□□□ 0.89
NUP54Q7Z3B4 DUX4L19-201ENST00000557448 1267 ntBASIC20.61■□□□□ 0.89
NUP54Q7Z3B4 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
NUP54Q7Z3B4 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC20.61■□□□□ 0.89
NUP54Q7Z3B4 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
NUP54Q7Z3B4 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
NUP54Q7Z3B4 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
NUP54Q7Z3B4 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
NUP54Q7Z3B4 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC20.6■□□□□ 0.89
NUP54Q7Z3B4 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
NUP54Q7Z3B4 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
NUP54Q7Z3B4 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC20.6■□□□□ 0.89
NUP54Q7Z3B4 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NUP54Q7Z3B4 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
NUP54Q7Z3B4 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NUP54Q7Z3B4 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
NUP54Q7Z3B4 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC20.6■□□□□ 0.89
NUP54Q7Z3B4 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC20.6■□□□□ 0.89
NUP54Q7Z3B4 AC099791.2-201ENST00000605725 427 ntBASIC20.6■□□□□ 0.89
NUP54Q7Z3B4 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
NUP54Q7Z3B4 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
NUP54Q7Z3B4 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
NUP54Q7Z3B4 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC20.6■□□□□ 0.89
NUP54Q7Z3B4 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NUP54Q7Z3B4 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NUP54Q7Z3B4 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
NUP54Q7Z3B4 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
NUP54Q7Z3B4 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC20.59■□□□□ 0.89
NUP54Q7Z3B4 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
NUP54Q7Z3B4 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
NUP54Q7Z3B4 AC092068.2-201ENST00000590491 1708 ntBASIC20.58■□□□□ 0.89
NUP54Q7Z3B4 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms