Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
CSPG4Q6UVK1 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CSPG4Q6UVK1 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CSPG4Q6UVK1 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CSPG4Q6UVK1 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC18.6■□□□□ 0.57
CSPG4Q6UVK1 AC026185.1-201ENST00000445748 174 ntBASIC18.6■□□□□ 0.57
CSPG4Q6UVK1 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
CSPG4Q6UVK1 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CSPG4Q6UVK1 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CSPG4Q6UVK1 CD37-213ENST00000598095 1598 ntTSL 2 BASIC18.59■□□□□ 0.57
CSPG4Q6UVK1 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
CSPG4Q6UVK1 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC18.59■□□□□ 0.57
CSPG4Q6UVK1 AC006015.1-201ENST00000429970 570 ntBASIC18.59■□□□□ 0.57
CSPG4Q6UVK1 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CSPG4Q6UVK1 AC080038.1-201ENST00000611274 1154 ntBASIC18.59■□□□□ 0.57
CSPG4Q6UVK1 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CSPG4Q6UVK1 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
CSPG4Q6UVK1 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CSPG4Q6UVK1 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CSPG4Q6UVK1 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
CSPG4Q6UVK1 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
CSPG4Q6UVK1 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC18.58■□□□□ 0.57
CSPG4Q6UVK1 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC18.58■□□□□ 0.57
CSPG4Q6UVK1 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC18.58■□□□□ 0.56
CSPG4Q6UVK1 NT5C3AP1-201ENST00000394500 1012 ntBASIC18.58■□□□□ 0.56
CSPG4Q6UVK1 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
CSPG4Q6UVK1 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC18.57■□□□□ 0.56
CSPG4Q6UVK1 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
CSPG4Q6UVK1 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CSPG4Q6UVK1 GAS2L1P2-201ENST00000436355 1356 ntBASIC18.57■□□□□ 0.56
CSPG4Q6UVK1 USF2-207ENST00000595068 1612 ntTSL 5 BASIC18.57■□□□□ 0.56
CSPG4Q6UVK1 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
CSPG4Q6UVK1 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC18.57■□□□□ 0.56
CSPG4Q6UVK1 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CSPG4Q6UVK1 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CSPG4Q6UVK1 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CSPG4Q6UVK1 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC18.57■□□□□ 0.56
CSPG4Q6UVK1 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC18.57■□□□□ 0.56
CSPG4Q6UVK1 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CSPG4Q6UVK1 MPST-204ENST00000404393 1329 ntTSL 5 BASIC18.56■□□□□ 0.56
CSPG4Q6UVK1 AC135731.1-201ENST00000569415 2548 ntBASIC18.56■□□□□ 0.56
CSPG4Q6UVK1 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CSPG4Q6UVK1 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CSPG4Q6UVK1 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
CSPG4Q6UVK1 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC18.56■□□□□ 0.56
CSPG4Q6UVK1 AC104771.1-201ENST00000603335 964 ntBASIC18.56■□□□□ 0.56
CSPG4Q6UVK1 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
CSPG4Q6UVK1 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CSPG4Q6UVK1 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC18.56■□□□□ 0.56
CSPG4Q6UVK1 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CSPG4Q6UVK1 STX7-201ENST00000367937 1090 ntTSL 5 BASIC18.56■□□□□ 0.56
CSPG4Q6UVK1 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC18.56■□□□□ 0.56
CSPG4Q6UVK1 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CSPG4Q6UVK1 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CSPG4Q6UVK1 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CSPG4Q6UVK1 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CSPG4Q6UVK1 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC18.55■□□□□ 0.56
CSPG4Q6UVK1 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CSPG4Q6UVK1 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC18.55■□□□□ 0.56
CSPG4Q6UVK1 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CSPG4Q6UVK1 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC18.55■□□□□ 0.56
CSPG4Q6UVK1 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC18.55■□□□□ 0.56
CSPG4Q6UVK1 AC137761.2-201ENST00000561729 223 ntBASIC18.55■□□□□ 0.56
CSPG4Q6UVK1 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC18.55■□□□□ 0.56
CSPG4Q6UVK1 AC145350.3-201ENST00000569033 163 ntBASIC18.55■□□□□ 0.56
CSPG4Q6UVK1 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC18.55■□□□□ 0.56
CSPG4Q6UVK1 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CSPG4Q6UVK1 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
CSPG4Q6UVK1 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CSPG4Q6UVK1 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC18.55■□□□□ 0.56
CSPG4Q6UVK1 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC18.55■□□□□ 0.56
CSPG4Q6UVK1 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CSPG4Q6UVK1 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC18.55■□□□□ 0.56
CSPG4Q6UVK1 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CSPG4Q6UVK1 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CSPG4Q6UVK1 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CSPG4Q6UVK1 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CSPG4Q6UVK1 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CSPG4Q6UVK1 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CSPG4Q6UVK1 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
CSPG4Q6UVK1 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC18.54■□□□□ 0.56
CSPG4Q6UVK1 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CSPG4Q6UVK1 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC18.54■□□□□ 0.56
CSPG4Q6UVK1 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CSPG4Q6UVK1 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CSPG4Q6UVK1 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CSPG4Q6UVK1 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
CSPG4Q6UVK1 CROCCP5-201ENST00000436658 830 ntBASIC18.54■□□□□ 0.56
CSPG4Q6UVK1 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC18.54■□□□□ 0.56
CSPG4Q6UVK1 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC18.54■□□□□ 0.56
CSPG4Q6UVK1 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC18.54■□□□□ 0.56
CSPG4Q6UVK1 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CSPG4Q6UVK1 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CSPG4Q6UVK1 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC18.54■□□□□ 0.56
CSPG4Q6UVK1 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CSPG4Q6UVK1 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC18.53■□□□□ 0.56
CSPG4Q6UVK1 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC18.53■□□□□ 0.56
CSPG4Q6UVK1 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
CSPG4Q6UVK1 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
CSPG4Q6UVK1 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC18.53■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms