Protein–RNA interactions for Protein: P62857

RPS28, 40S ribosomal protein S28, humanhuman

Known RBP Predictions only

Length 69 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28P62857 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RPS28P62857 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
RPS28P62857 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RPS28P62857 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
RPS28P62857 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC13.18□□□□□ -0.3
RPS28P62857 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RPS28P62857 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
RPS28P62857 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC13.17□□□□□ -0.3
RPS28P62857 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC13.17□□□□□ -0.3
RPS28P62857 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RPS28P62857 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RPS28P62857 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RPS28P62857 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
RPS28P62857 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
RPS28P62857 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC13.17□□□□□ -0.3
RPS28P62857 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RPS28P62857 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
RPS28P62857 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
RPS28P62857 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RPS28P62857 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
RPS28P62857 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
RPS28P62857 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RPS28P62857 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC13.17□□□□□ -0.3
RPS28P62857 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
RPS28P62857 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RPS28P62857 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
RPS28P62857 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
RPS28P62857 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
RPS28P62857 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
RPS28P62857 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
RPS28P62857 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
RPS28P62857 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
RPS28P62857 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
RPS28P62857 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
RPS28P62857 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC13.16□□□□□ -0.3
RPS28P62857 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RPS28P62857 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC13.16□□□□□ -0.3
RPS28P62857 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
RPS28P62857 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
RPS28P62857 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC13.16□□□□□ -0.3
RPS28P62857 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RPS28P62857 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC13.16□□□□□ -0.3
RPS28P62857 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
RPS28P62857 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC13.15□□□□□ -0.3
RPS28P62857 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RPS28P62857 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
RPS28P62857 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
RPS28P62857 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
RPS28P62857 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
RPS28P62857 FBXW4P1-201ENST00000426721 2239 ntBASIC13.15□□□□□ -0.3
RPS28P62857 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RPS28P62857 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RPS28P62857 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
RPS28P62857 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
RPS28P62857 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC13.15□□□□□ -0.3
RPS28P62857 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RPS28P62857 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC13.15□□□□□ -0.3
RPS28P62857 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
RPS28P62857 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RPS28P62857 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
RPS28P62857 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC13.14□□□□□ -0.31
RPS28P62857 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
RPS28P62857 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
RPS28P62857 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC13.14□□□□□ -0.31
RPS28P62857 AL032819.2-201ENST00000624543 2162 ntBASIC13.14□□□□□ -0.31
RPS28P62857 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
RPS28P62857 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
RPS28P62857 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
RPS28P62857 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
RPS28P62857 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
RPS28P62857 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
RPS28P62857 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
RPS28P62857 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
RPS28P62857 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
RPS28P62857 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC13.14□□□□□ -0.31
RPS28P62857 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
RPS28P62857 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
RPS28P62857 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
RPS28P62857 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
RPS28P62857 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
RPS28P62857 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
RPS28P62857 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC13.13□□□□□ -0.31
RPS28P62857 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
RPS28P62857 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
RPS28P62857 AL157384.1-201ENST00000445995 2473 ntBASIC13.13□□□□□ -0.31
RPS28P62857 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC13.13□□□□□ -0.31
RPS28P62857 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
RPS28P62857 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC13.13□□□□□ -0.31
RPS28P62857 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
RPS28P62857 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
RPS28P62857 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC13.13□□□□□ -0.31
RPS28P62857 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
RPS28P62857 AC242852.2-201ENST00000615738 1807 ntBASIC13.13□□□□□ -0.31
RPS28P62857 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC13.13□□□□□ -0.31
RPS28P62857 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC13.13□□□□□ -0.31
RPS28P62857 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
RPS28P62857 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
RPS28P62857 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
RPS28P62857 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
RPS28P62857 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms