Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 MIR4281-201ENST00000580852 62 ntBASIC20.82■□□□□ 0.92
CDH12P55289 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CDH12P55289 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC20.82■□□□□ 0.92
CDH12P55289 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CDH12P55289 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CDH12P55289 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC20.81■□□□□ 0.92
CDH12P55289 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
CDH12P55289 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CDH12P55289 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CDH12P55289 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CDH12P55289 AF131216.4-201ENST00000638924 1588 ntBASIC20.81■□□□□ 0.92
CDH12P55289 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CDH12P55289 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
CDH12P55289 LSR-203ENST00000360798 1963 ntTSL 2 BASIC20.81■□□□□ 0.92
CDH12P55289 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CDH12P55289 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CDH12P55289 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC20.8■□□□□ 0.92
CDH12P55289 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC20.8■□□□□ 0.92
CDH12P55289 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
CDH12P55289 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CDH12P55289 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CDH12P55289 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CDH12P55289 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CDH12P55289 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CDH12P55289 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC20.8■□□□□ 0.92
CDH12P55289 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC20.8■□□□□ 0.92
CDH12P55289 ECEL1P1-201ENST00000373592 1742 ntBASIC20.8■□□□□ 0.92
CDH12P55289 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CDH12P55289 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CDH12P55289 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CDH12P55289 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CDH12P55289 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CDH12P55289 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CDH12P55289 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CDH12P55289 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
CDH12P55289 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CDH12P55289 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CDH12P55289 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC20.79■□□□□ 0.92
CDH12P55289 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.79■□□□□ 0.92
CDH12P55289 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CDH12P55289 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CDH12P55289 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CDH12P55289 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC20.79■□□□□ 0.92
CDH12P55289 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC20.79■□□□□ 0.92
CDH12P55289 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC20.79■□□□□ 0.92
CDH12P55289 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CDH12P55289 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CDH12P55289 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CDH12P55289 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CDH12P55289 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CDH12P55289 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC20.78■□□□□ 0.92
CDH12P55289 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CDH12P55289 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CDH12P55289 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
CDH12P55289 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CDH12P55289 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CDH12P55289 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CDH12P55289 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CDH12P55289 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC20.78■□□□□ 0.92
CDH12P55289 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CDH12P55289 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC20.78■□□□□ 0.92
CDH12P55289 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC20.78■□□□□ 0.92
CDH12P55289 MIR4508-201ENST00000584178 70 ntBASIC20.78■□□□□ 0.92
CDH12P55289 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CDH12P55289 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
CDH12P55289 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
CDH12P55289 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CDH12P55289 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CDH12P55289 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CDH12P55289 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
CDH12P55289 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CDH12P55289 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CDH12P55289 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC20.77■□□□□ 0.92
CDH12P55289 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
CDH12P55289 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC20.77■□□□□ 0.92
CDH12P55289 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
CDH12P55289 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CDH12P55289 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CDH12P55289 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC20.77■□□□□ 0.91
CDH12P55289 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC20.77■□□□□ 0.91
CDH12P55289 PKD1P6-201ENST00000343738 4769 ntBASIC20.77■□□□□ 0.91
CDH12P55289 GCA-201ENST00000233612 1694 ntTSL 2 BASIC20.77■□□□□ 0.91
CDH12P55289 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC20.77■□□□□ 0.91
CDH12P55289 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CDH12P55289 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC20.76■□□□□ 0.91
CDH12P55289 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
CDH12P55289 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC20.76■□□□□ 0.91
CDH12P55289 AC103834.1-201ENST00000520383 144 ntBASIC20.76■□□□□ 0.91
CDH12P55289 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CDH12P55289 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC20.76■□□□□ 0.91
CDH12P55289 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CDH12P55289 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC20.76■□□□□ 0.91
CDH12P55289 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CDH12P55289 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CDH12P55289 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.76■□□□□ 0.91
CDH12P55289 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CDH12P55289 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CDH12P55289 AC127496.7-201ENST00000625110 1798 ntBASIC20.75■□□□□ 0.91
CDH12P55289 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CDH12P55289 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC20.75■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms