Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
SHMT1P34896 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
SHMT1P34896 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
SHMT1P34896 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
SHMT1P34896 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC26.42■■□□□ 1.82
SHMT1P34896 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC26.42■■□□□ 1.82
SHMT1P34896 IRS3P-201ENST00000223076 1006 ntBASIC26.42■■□□□ 1.82
SHMT1P34896 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC26.42■■□□□ 1.82
SHMT1P34896 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
SHMT1P34896 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC26.42■■□□□ 1.82
SHMT1P34896 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
SHMT1P34896 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
SHMT1P34896 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC26.41■■□□□ 1.82
SHMT1P34896 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
SHMT1P34896 AC144652.1-201ENST00000609974 1624 ntBASIC26.41■■□□□ 1.82
SHMT1P34896 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC26.41■■□□□ 1.82
SHMT1P34896 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC26.41■■□□□ 1.82
SHMT1P34896 GRAMD4P2-201ENST00000423297 1097 ntBASIC26.41■■□□□ 1.82
SHMT1P34896 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC26.41■■□□□ 1.82
SHMT1P34896 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
SHMT1P34896 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC26.41■■□□□ 1.82
SHMT1P34896 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC26.4■■□□□ 1.82
SHMT1P34896 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC26.4■■□□□ 1.82
SHMT1P34896 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
SHMT1P34896 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC26.4■■□□□ 1.82
SHMT1P34896 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC26.4■■□□□ 1.82
SHMT1P34896 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC26.4■■□□□ 1.82
SHMT1P34896 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC26.4■■□□□ 1.82
SHMT1P34896 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
SHMT1P34896 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
SHMT1P34896 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
SHMT1P34896 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC26.4■■□□□ 1.82
SHMT1P34896 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
SHMT1P34896 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
SHMT1P34896 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
SHMT1P34896 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
SHMT1P34896 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC26.39■■□□□ 1.82
SHMT1P34896 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC26.39■■□□□ 1.82
SHMT1P34896 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
SHMT1P34896 MIR6821-201ENST00000617625 74 ntBASIC26.39■■□□□ 1.82
SHMT1P34896 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.81
SHMT1P34896 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC26.39■■□□□ 1.81
SHMT1P34896 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC26.38■■□□□ 1.81
SHMT1P34896 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
SHMT1P34896 JTB-203ENST00000368589 1216 ntTSL 2 BASIC26.38■■□□□ 1.81
SHMT1P34896 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC26.38■■□□□ 1.81
SHMT1P34896 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC26.38■■□□□ 1.81
SHMT1P34896 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC26.38■■□□□ 1.81
SHMT1P34896 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
SHMT1P34896 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
SHMT1P34896 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC26.38■■□□□ 1.81
SHMT1P34896 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
SHMT1P34896 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
SHMT1P34896 AC097381.1-201ENST00000429019 1296 ntBASIC26.37■■□□□ 1.81
SHMT1P34896 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC26.37■■□□□ 1.81
SHMT1P34896 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC26.37■■□□□ 1.81
SHMT1P34896 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC26.37■■□□□ 1.81
SHMT1P34896 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
SHMT1P34896 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
SHMT1P34896 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC26.36■■□□□ 1.81
SHMT1P34896 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC26.36■■□□□ 1.81
SHMT1P34896 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC26.36■■□□□ 1.81
SHMT1P34896 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC26.36■■□□□ 1.81
SHMT1P34896 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
SHMT1P34896 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
SHMT1P34896 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
SHMT1P34896 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
SHMT1P34896 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
SHMT1P34896 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
SHMT1P34896 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC26.36■■□□□ 1.81
SHMT1P34896 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
SHMT1P34896 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC26.36■■□□□ 1.81
SHMT1P34896 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC26.36■■□□□ 1.81
SHMT1P34896 AC126544.1-201ENST00000580842 1059 ntBASIC26.36■■□□□ 1.81
SHMT1P34896 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC26.36■■□□□ 1.81
SHMT1P34896 AC010525.1-201ENST00000585559 441 ntBASIC26.36■■□□□ 1.81
SHMT1P34896 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC26.36■■□□□ 1.81
SHMT1P34896 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC26.36■■□□□ 1.81
SHMT1P34896 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC26.36■■□□□ 1.81
SHMT1P34896 LINC01529-204ENST00000636474 1715 ntBASIC26.36■■□□□ 1.81
SHMT1P34896 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC26.36■■□□□ 1.81
SHMT1P34896 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
SHMT1P34896 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC26.35■■□□□ 1.81
SHMT1P34896 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC26.35■■□□□ 1.81
SHMT1P34896 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC26.35■■□□□ 1.81
SHMT1P34896 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC26.35■■□□□ 1.81
SHMT1P34896 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC26.35■■□□□ 1.81
SHMT1P34896 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
SHMT1P34896 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC26.34■■□□□ 1.81
SHMT1P34896 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC26.34■■□□□ 1.81
SHMT1P34896 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC26.34■■□□□ 1.81
SHMT1P34896 AC087623.3-201ENST00000607047 1098 ntBASIC26.34■■□□□ 1.81
SHMT1P34896 MIR5787-201ENST00000611784 55 ntBASIC26.34■■□□□ 1.81
SHMT1P34896 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
SHMT1P34896 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
SHMT1P34896 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
SHMT1P34896 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC26.33■■□□□ 1.81
SHMT1P34896 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC26.33■■□□□ 1.81
SHMT1P34896 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC26.33■■□□□ 1.81
SHMT1P34896 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC26.33■■□□□ 1.81
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms