Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 MPST-208ENST00000628507 698 ntTSL 5 BASIC18.9■□□□□ 0.62
USF1P22415 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
USF1P22415 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
USF1P22415 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
USF1P22415 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
USF1P22415 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC18.9■□□□□ 0.62
USF1P22415 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
USF1P22415 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
USF1P22415 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
USF1P22415 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
USF1P22415 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC18.89■□□□□ 0.61
USF1P22415 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
USF1P22415 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.61
USF1P22415 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
USF1P22415 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
USF1P22415 GLI3-203ENST00000437480 451 ntTSL 2 BASIC18.89■□□□□ 0.61
USF1P22415 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC18.89■□□□□ 0.61
USF1P22415 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
USF1P22415 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
USF1P22415 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
USF1P22415 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC18.89■□□□□ 0.61
USF1P22415 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
USF1P22415 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
USF1P22415 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC18.88■□□□□ 0.61
USF1P22415 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
USF1P22415 GRAMD4P2-201ENST00000423297 1097 ntBASIC18.88■□□□□ 0.61
USF1P22415 AL162430.1-201ENST00000480705 870 ntBASIC18.88■□□□□ 0.61
USF1P22415 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
USF1P22415 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC18.88■□□□□ 0.61
USF1P22415 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
USF1P22415 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
USF1P22415 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
USF1P22415 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC18.88■□□□□ 0.61
USF1P22415 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC18.88■□□□□ 0.61
USF1P22415 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
USF1P22415 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
USF1P22415 LINC01124-201ENST00000409786 2117 ntBASIC18.88■□□□□ 0.61
USF1P22415 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
USF1P22415 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC18.88■□□□□ 0.61
USF1P22415 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USF1P22415 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC18.87■□□□□ 0.61
USF1P22415 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC18.87■□□□□ 0.61
USF1P22415 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USF1P22415 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
USF1P22415 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
USF1P22415 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC18.87■□□□□ 0.61
USF1P22415 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC18.87■□□□□ 0.61
USF1P22415 CD37-213ENST00000598095 1598 ntTSL 2 BASIC18.87■□□□□ 0.61
USF1P22415 VGF-203ENST00000611537 1622 ntTSL 5 BASIC18.87■□□□□ 0.61
USF1P22415 NKILA-201ENST00000613231 537 ntTSL 4 BASIC18.87■□□□□ 0.61
USF1P22415 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USF1P22415 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USF1P22415 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC18.86■□□□□ 0.61
USF1P22415 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
USF1P22415 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
USF1P22415 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
USF1P22415 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
USF1P22415 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USF1P22415 JTB-203ENST00000368589 1216 ntTSL 2 BASIC18.86■□□□□ 0.61
USF1P22415 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC18.86■□□□□ 0.61
USF1P22415 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
USF1P22415 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
USF1P22415 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
USF1P22415 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USF1P22415 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
USF1P22415 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
USF1P22415 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
USF1P22415 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
USF1P22415 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
USF1P22415 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
USF1P22415 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
USF1P22415 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC18.85■□□□□ 0.61
USF1P22415 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC18.85■□□□□ 0.61
USF1P22415 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC18.85■□□□□ 0.61
USF1P22415 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC18.85■□□□□ 0.61
USF1P22415 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
USF1P22415 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
USF1P22415 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
USF1P22415 AC141586.4-201ENST00000624558 1573 ntBASIC18.85■□□□□ 0.61
USF1P22415 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC18.84■□□□□ 0.61
USF1P22415 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
USF1P22415 AK1-201ENST00000223836 736 ntTSL 3 BASIC18.84■□□□□ 0.61
USF1P22415 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
USF1P22415 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC18.84■□□□□ 0.61
USF1P22415 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
USF1P22415 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
USF1P22415 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
USF1P22415 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
USF1P22415 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
USF1P22415 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC18.83■□□□□ 0.61
USF1P22415 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
USF1P22415 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC18.83■□□□□ 0.61
USF1P22415 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
USF1P22415 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
USF1P22415 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC18.83■□□□□ 0.6
USF1P22415 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC18.83■□□□□ 0.6
USF1P22415 AC126544.1-201ENST00000580842 1059 ntBASIC18.83■□□□□ 0.6
USF1P22415 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC18.83■□□□□ 0.6
USF1P22415 pRNA.6-201ENST00000610482 90 ntBASIC18.83■□□□□ 0.6
USF1P22415 pRNA.5-201ENST00000612139 90 ntBASIC18.83■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms