Protein–RNA interactions for Protein: P0CW20

LIMS4, LIM and senescent cell antigen-like-containing domain protein 4, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4P0CW20 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
LIMS4P0CW20 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
LIMS4P0CW20 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
LIMS4P0CW20 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC19.96■□□□□ 0.79
LIMS4P0CW20 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LIMS4P0CW20 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
LIMS4P0CW20 AL024507.2-201ENST00000606070 2574 ntBASIC19.95■□□□□ 0.78
LIMS4P0CW20 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
LIMS4P0CW20 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LIMS4P0CW20 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
LIMS4P0CW20 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LIMS4P0CW20 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
LIMS4P0CW20 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LIMS4P0CW20 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC19.95■□□□□ 0.78
LIMS4P0CW20 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
LIMS4P0CW20 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LIMS4P0CW20 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LIMS4P0CW20 LONRF2P2-201ENST00000439212 571 ntBASIC19.95■□□□□ 0.78
LIMS4P0CW20 AC011551.1-201ENST00000614101 683 ntBASIC19.95■□□□□ 0.78
LIMS4P0CW20 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LIMS4P0CW20 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
LIMS4P0CW20 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
LIMS4P0CW20 AC092053.2-201ENST00000640557 1818 ntBASIC19.95■□□□□ 0.78
LIMS4P0CW20 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
LIMS4P0CW20 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
LIMS4P0CW20 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
LIMS4P0CW20 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIMS4P0CW20 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIMS4P0CW20 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
LIMS4P0CW20 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC19.94■□□□□ 0.78
LIMS4P0CW20 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
LIMS4P0CW20 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
LIMS4P0CW20 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIMS4P0CW20 C11orf96-202ENST00000528572 1834 ntBASIC19.94■□□□□ 0.78
LIMS4P0CW20 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIMS4P0CW20 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIMS4P0CW20 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIMS4P0CW20 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIMS4P0CW20 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIMS4P0CW20 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIMS4P0CW20 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIMS4P0CW20 MIR6765-201ENST00000614092 87 ntBASIC19.93■□□□□ 0.78
LIMS4P0CW20 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC19.93■□□□□ 0.78
LIMS4P0CW20 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIMS4P0CW20 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC19.93■□□□□ 0.78
LIMS4P0CW20 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMS4P0CW20 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMS4P0CW20 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC19.92■□□□□ 0.78
LIMS4P0CW20 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC19.92■□□□□ 0.78
LIMS4P0CW20 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMS4P0CW20 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMS4P0CW20 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMS4P0CW20 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMS4P0CW20 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
LIMS4P0CW20 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMS4P0CW20 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
LIMS4P0CW20 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
LIMS4P0CW20 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMS4P0CW20 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC19.92■□□□□ 0.78
LIMS4P0CW20 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC19.92■□□□□ 0.78
LIMS4P0CW20 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC19.92■□□□□ 0.78
LIMS4P0CW20 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC19.92■□□□□ 0.78
LIMS4P0CW20 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMS4P0CW20 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMS4P0CW20 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMS4P0CW20 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC19.91■□□□□ 0.78
LIMS4P0CW20 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
LIMS4P0CW20 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LIMS4P0CW20 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
LIMS4P0CW20 DUX4L9-201ENST00000449051 1259 ntBASIC19.91■□□□□ 0.78
LIMS4P0CW20 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC19.91■□□□□ 0.78
LIMS4P0CW20 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LIMS4P0CW20 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
LIMS4P0CW20 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
LIMS4P0CW20 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LIMS4P0CW20 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
LIMS4P0CW20 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LIMS4P0CW20 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIMS4P0CW20 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC19.9■□□□□ 0.78
LIMS4P0CW20 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIMS4P0CW20 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
LIMS4P0CW20 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC19.9■□□□□ 0.78
LIMS4P0CW20 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
LIMS4P0CW20 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
LIMS4P0CW20 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
LIMS4P0CW20 BID-212ENST00000614949 1988 ntTSL 5 BASIC19.9■□□□□ 0.78
LIMS4P0CW20 AC080038.3-201ENST00000623346 1952 ntBASIC19.9■□□□□ 0.78
LIMS4P0CW20 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
LIMS4P0CW20 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIMS4P0CW20 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.78
LIMS4P0CW20 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
LIMS4P0CW20 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LIMS4P0CW20 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC19.89■□□□□ 0.77
LIMS4P0CW20 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC19.89■□□□□ 0.77
LIMS4P0CW20 AL353803.4-201ENST00000565882 1934 ntBASIC19.89■□□□□ 0.77
LIMS4P0CW20 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LIMS4P0CW20 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
LIMS4P0CW20 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
LIMS4P0CW20 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC19.88■□□□□ 0.77
LIMS4P0CW20 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 60.8 ms