Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
LIMS3P0CW19 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
LIMS3P0CW19 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
LIMS3P0CW19 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC19.96■□□□□ 0.79
LIMS3P0CW19 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LIMS3P0CW19 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
LIMS3P0CW19 AL024507.2-201ENST00000606070 2574 ntBASIC19.95■□□□□ 0.78
LIMS3P0CW19 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
LIMS3P0CW19 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LIMS3P0CW19 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
LIMS3P0CW19 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LIMS3P0CW19 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
LIMS3P0CW19 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LIMS3P0CW19 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC19.95■□□□□ 0.78
LIMS3P0CW19 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
LIMS3P0CW19 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LIMS3P0CW19 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LIMS3P0CW19 LONRF2P2-201ENST00000439212 571 ntBASIC19.95■□□□□ 0.78
LIMS3P0CW19 AC011551.1-201ENST00000614101 683 ntBASIC19.95■□□□□ 0.78
LIMS3P0CW19 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LIMS3P0CW19 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
LIMS3P0CW19 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
LIMS3P0CW19 AC092053.2-201ENST00000640557 1818 ntBASIC19.95■□□□□ 0.78
LIMS3P0CW19 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
LIMS3P0CW19 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
LIMS3P0CW19 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
LIMS3P0CW19 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIMS3P0CW19 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIMS3P0CW19 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
LIMS3P0CW19 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC19.94■□□□□ 0.78
LIMS3P0CW19 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
LIMS3P0CW19 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
LIMS3P0CW19 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIMS3P0CW19 C11orf96-202ENST00000528572 1834 ntBASIC19.94■□□□□ 0.78
LIMS3P0CW19 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIMS3P0CW19 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIMS3P0CW19 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIMS3P0CW19 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIMS3P0CW19 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIMS3P0CW19 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIMS3P0CW19 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIMS3P0CW19 MIR6765-201ENST00000614092 87 ntBASIC19.93■□□□□ 0.78
LIMS3P0CW19 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC19.93■□□□□ 0.78
LIMS3P0CW19 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIMS3P0CW19 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC19.93■□□□□ 0.78
LIMS3P0CW19 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMS3P0CW19 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMS3P0CW19 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC19.92■□□□□ 0.78
LIMS3P0CW19 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC19.92■□□□□ 0.78
LIMS3P0CW19 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMS3P0CW19 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMS3P0CW19 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMS3P0CW19 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMS3P0CW19 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
LIMS3P0CW19 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMS3P0CW19 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
LIMS3P0CW19 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
LIMS3P0CW19 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMS3P0CW19 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC19.92■□□□□ 0.78
LIMS3P0CW19 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC19.92■□□□□ 0.78
LIMS3P0CW19 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC19.92■□□□□ 0.78
LIMS3P0CW19 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC19.92■□□□□ 0.78
LIMS3P0CW19 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMS3P0CW19 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMS3P0CW19 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMS3P0CW19 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC19.91■□□□□ 0.78
LIMS3P0CW19 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
LIMS3P0CW19 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LIMS3P0CW19 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
LIMS3P0CW19 DUX4L9-201ENST00000449051 1259 ntBASIC19.91■□□□□ 0.78
LIMS3P0CW19 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC19.91■□□□□ 0.78
LIMS3P0CW19 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LIMS3P0CW19 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
LIMS3P0CW19 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
LIMS3P0CW19 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LIMS3P0CW19 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
LIMS3P0CW19 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LIMS3P0CW19 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIMS3P0CW19 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC19.9■□□□□ 0.78
LIMS3P0CW19 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIMS3P0CW19 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
LIMS3P0CW19 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC19.9■□□□□ 0.78
LIMS3P0CW19 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
LIMS3P0CW19 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
LIMS3P0CW19 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
LIMS3P0CW19 BID-212ENST00000614949 1988 ntTSL 5 BASIC19.9■□□□□ 0.78
LIMS3P0CW19 AC080038.3-201ENST00000623346 1952 ntBASIC19.9■□□□□ 0.78
LIMS3P0CW19 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
LIMS3P0CW19 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIMS3P0CW19 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.78
LIMS3P0CW19 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
LIMS3P0CW19 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LIMS3P0CW19 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC19.89■□□□□ 0.77
LIMS3P0CW19 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC19.89■□□□□ 0.77
LIMS3P0CW19 AL353803.4-201ENST00000565882 1934 ntBASIC19.89■□□□□ 0.77
LIMS3P0CW19 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LIMS3P0CW19 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
LIMS3P0CW19 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
LIMS3P0CW19 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC19.88■□□□□ 0.77
LIMS3P0CW19 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms