Protein–RNA interactions for Protein: P0C091

FREM3, FRAS1-related extracellular matrix protein 3, humanhuman

Predictions only

Length 2,139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FREM3P0C091 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
FREM3P0C091 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
FREM3P0C091 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
FREM3P0C091 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC20.39■□□□□ 0.86
FREM3P0C091 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
FREM3P0C091 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.86
FREM3P0C091 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
FREM3P0C091 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
FREM3P0C091 ASB1-202ENST00000409297 878 ntTSL 5 BASIC20.39■□□□□ 0.85
FREM3P0C091 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC20.39■□□□□ 0.85
FREM3P0C091 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
FREM3P0C091 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
FREM3P0C091 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC20.39■□□□□ 0.85
FREM3P0C091 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
FREM3P0C091 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
FREM3P0C091 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC20.38■□□□□ 0.85
FREM3P0C091 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
FREM3P0C091 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
FREM3P0C091 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC20.38■□□□□ 0.85
FREM3P0C091 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC20.38■□□□□ 0.85
FREM3P0C091 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC20.38■□□□□ 0.85
FREM3P0C091 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC20.38■□□□□ 0.85
FREM3P0C091 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
FREM3P0C091 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC20.37■□□□□ 0.85
FREM3P0C091 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC20.37■□□□□ 0.85
FREM3P0C091 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
FREM3P0C091 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
FREM3P0C091 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
FREM3P0C091 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
FREM3P0C091 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
FREM3P0C091 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC20.37■□□□□ 0.85
FREM3P0C091 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
FREM3P0C091 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
FREM3P0C091 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC20.37■□□□□ 0.85
FREM3P0C091 AC241377.3-202ENST00000626088 1088 ntBASIC20.37■□□□□ 0.85
FREM3P0C091 AC241585.3-202ENST00000628937 1088 ntBASIC20.37■□□□□ 0.85
FREM3P0C091 AC245100.8-202ENST00000629247 1058 ntBASIC20.37■□□□□ 0.85
FREM3P0C091 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
FREM3P0C091 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
FREM3P0C091 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
FREM3P0C091 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
FREM3P0C091 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC20.37■□□□□ 0.85
FREM3P0C091 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
FREM3P0C091 SNX3-202ENST00000349379 890 ntTSL 2 BASIC20.36■□□□□ 0.85
FREM3P0C091 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
FREM3P0C091 AF213884.3-201ENST00000563833 479 ntBASIC20.36■□□□□ 0.85
FREM3P0C091 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC20.36■□□□□ 0.85
FREM3P0C091 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
FREM3P0C091 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
FREM3P0C091 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC20.36■□□□□ 0.85
FREM3P0C091 AC011298.3-201ENST00000615796 283 ntBASIC20.36■□□□□ 0.85
FREM3P0C091 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
FREM3P0C091 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
FREM3P0C091 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC20.36■□□□□ 0.85
FREM3P0C091 VGF-203ENST00000611537 1622 ntTSL 5 BASIC20.36■□□□□ 0.85
FREM3P0C091 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
FREM3P0C091 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
FREM3P0C091 AC005837.3-201ENST00000612163 286 ntBASIC20.35■□□□□ 0.85
FREM3P0C091 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
FREM3P0C091 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
FREM3P0C091 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC20.35■□□□□ 0.85
FREM3P0C091 H19-210ENST00000439725 1929 ntTSL 2 BASIC20.34■□□□□ 0.85
FREM3P0C091 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC20.34■□□□□ 0.85
FREM3P0C091 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
FREM3P0C091 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC20.34■□□□□ 0.85
FREM3P0C091 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
FREM3P0C091 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
FREM3P0C091 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
FREM3P0C091 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC20.34■□□□□ 0.85
FREM3P0C091 GTSE1-AS1-202ENST00000623117 1518 ntBASIC20.34■□□□□ 0.85
FREM3P0C091 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
FREM3P0C091 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC20.33■□□□□ 0.85
FREM3P0C091 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC20.33■□□□□ 0.85
FREM3P0C091 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.85
FREM3P0C091 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
FREM3P0C091 EDA-201ENST00000338901 1233 ntBASIC20.33■□□□□ 0.85
FREM3P0C091 SLC47A1P1-202ENST00000449666 945 ntBASIC20.33■□□□□ 0.85
FREM3P0C091 AP001330.3-201ENST00000520123 633 ntBASIC20.33■□□□□ 0.85
FREM3P0C091 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC20.33■□□□□ 0.85
FREM3P0C091 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.85
FREM3P0C091 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
FREM3P0C091 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
FREM3P0C091 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC20.33■□□□□ 0.84
FREM3P0C091 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
FREM3P0C091 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC20.33■□□□□ 0.84
FREM3P0C091 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC20.33■□□□□ 0.84
FREM3P0C091 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC20.33■□□□□ 0.84
FREM3P0C091 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
FREM3P0C091 LTK-203ENST00000453182 2412 ntTSL 2 BASIC20.33■□□□□ 0.84
FREM3P0C091 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
FREM3P0C091 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
FREM3P0C091 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
FREM3P0C091 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC20.32■□□□□ 0.84
FREM3P0C091 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
FREM3P0C091 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
FREM3P0C091 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
FREM3P0C091 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC20.32■□□□□ 0.84
FREM3P0C091 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC20.32■□□□□ 0.84
FREM3P0C091 AL136162.1-201ENST00000607711 1078 ntBASIC20.32■□□□□ 0.84
FREM3P0C091 GRAMD4P4-201ENST00000613563 1115 ntBASIC20.32■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 16.1 ms