Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
LDLRP01130 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
LDLRP01130 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC21.49■■□□□ 1.03
LDLRP01130 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC21.49■■□□□ 1.03
LDLRP01130 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC21.49■■□□□ 1.03
LDLRP01130 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
LDLRP01130 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
LDLRP01130 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC21.49■■□□□ 1.03
LDLRP01130 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
LDLRP01130 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
LDLRP01130 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
LDLRP01130 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LDLRP01130 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
LDLRP01130 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LDLRP01130 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC21.48■■□□□ 1.03
LDLRP01130 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
LDLRP01130 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC21.48■■□□□ 1.03
LDLRP01130 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC21.48■■□□□ 1.03
LDLRP01130 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LDLRP01130 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LDLRP01130 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LDLRP01130 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC21.48■■□□□ 1.03
LDLRP01130 PKD1P6-201ENST00000343738 4769 ntBASIC21.48■■□□□ 1.03
LDLRP01130 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
LDLRP01130 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC21.47■■□□□ 1.03
LDLRP01130 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
LDLRP01130 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
LDLRP01130 C1orf229-201ENST00000623686 2258 ntBASIC21.47■■□□□ 1.03
LDLRP01130 DUSP8P3-201ENST00000399571 1760 ntBASIC21.47■■□□□ 1.03
LDLRP01130 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC21.47■■□□□ 1.03
LDLRP01130 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC21.47■■□□□ 1.03
LDLRP01130 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
LDLRP01130 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
LDLRP01130 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
LDLRP01130 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC21.47■■□□□ 1.03
LDLRP01130 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
LDLRP01130 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
LDLRP01130 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
LDLRP01130 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
LDLRP01130 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
LDLRP01130 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
LDLRP01130 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
LDLRP01130 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
LDLRP01130 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
LDLRP01130 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC21.46■■□□□ 1.03
LDLRP01130 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC21.46■■□□□ 1.03
LDLRP01130 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
LDLRP01130 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
LDLRP01130 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
LDLRP01130 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
LDLRP01130 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.03
LDLRP01130 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC21.45■■□□□ 1.03
LDLRP01130 LINC00526-201ENST00000581067 1875 ntBASIC21.45■■□□□ 1.02
LDLRP01130 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
LDLRP01130 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
LDLRP01130 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
LDLRP01130 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC21.45■■□□□ 1.02
LDLRP01130 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC21.45■■□□□ 1.02
LDLRP01130 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
LDLRP01130 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC21.45■■□□□ 1.02
LDLRP01130 AC092028.1-203ENST00000608262 953 ntBASIC21.45■■□□□ 1.02
LDLRP01130 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC21.45■■□□□ 1.02
LDLRP01130 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
LDLRP01130 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
LDLRP01130 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
LDLRP01130 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
LDLRP01130 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
LDLRP01130 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC21.45■■□□□ 1.02
LDLRP01130 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
LDLRP01130 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
LDLRP01130 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
LDLRP01130 AC092068.2-201ENST00000590491 1708 ntBASIC21.44■■□□□ 1.02
LDLRP01130 FOXO3B-201ENST00000395675 1928 ntBASIC21.44■■□□□ 1.02
LDLRP01130 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
LDLRP01130 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
LDLRP01130 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
LDLRP01130 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC21.43■■□□□ 1.02
LDLRP01130 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
LDLRP01130 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
LDLRP01130 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC21.43■■□□□ 1.02
LDLRP01130 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC21.43■■□□□ 1.02
LDLRP01130 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
LDLRP01130 GUSBP5-202ENST00000510805 1989 ntBASIC21.43■■□□□ 1.02
LDLRP01130 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC21.43■■□□□ 1.02
LDLRP01130 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
LDLRP01130 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC21.42■■□□□ 1.02
LDLRP01130 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
LDLRP01130 KRT18P10-201ENST00000388836 1287 ntBASIC21.42■■□□□ 1.02
LDLRP01130 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC21.42■■□□□ 1.02
LDLRP01130 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC21.42■■□□□ 1.02
LDLRP01130 AC092666.2-201ENST00000613287 246 ntBASIC21.42■■□□□ 1.02
LDLRP01130 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC21.42■■□□□ 1.02
LDLRP01130 AL117332.1-201ENST00000622628 974 ntBASIC21.42■■□□□ 1.02
LDLRP01130 AC127496.7-201ENST00000625110 1798 ntBASIC21.42■■□□□ 1.02
LDLRP01130 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
LDLRP01130 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC21.41■■□□□ 1.02
LDLRP01130 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
LDLRP01130 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
LDLRP01130 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
LDLRP01130 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms