Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC21.27■■□□□ 1
CPSF4O95639 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CPSF4O95639 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CPSF4O95639 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC21.27■■□□□ 1
CPSF4O95639 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■■□□□ 1
CPSF4O95639 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC21.27■■□□□ 1
CPSF4O95639 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC21.27■■□□□ 1
CPSF4O95639 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC21.27■■□□□ 1
CPSF4O95639 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC21.27■■□□□ 1
CPSF4O95639 AC103834.1-201ENST00000520383 144 ntBASIC21.27■■□□□ 1
CPSF4O95639 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
CPSF4O95639 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CPSF4O95639 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
CPSF4O95639 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
CPSF4O95639 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
CPSF4O95639 TERT-206ENST00000508104 2486 ntTSL 5 BASIC21.27■□□□□ 0.99
CPSF4O95639 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■□□□□ 0.99
CPSF4O95639 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC21.27■□□□□ 0.99
CPSF4O95639 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC21.26■□□□□ 0.99
CPSF4O95639 USF2-207ENST00000595068 1612 ntTSL 5 BASIC21.26■□□□□ 0.99
CPSF4O95639 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
CPSF4O95639 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
CPSF4O95639 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CPSF4O95639 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CPSF4O95639 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC21.26■□□□□ 0.99
CPSF4O95639 COMT-203ENST00000403184 2217 ntTSL 2 BASIC21.26■□□□□ 0.99
CPSF4O95639 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC21.26■□□□□ 0.99
CPSF4O95639 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CPSF4O95639 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CPSF4O95639 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
CPSF4O95639 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
CPSF4O95639 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC21.25■□□□□ 0.99
CPSF4O95639 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CPSF4O95639 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC21.25■□□□□ 0.99
CPSF4O95639 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC21.25■□□□□ 0.99
CPSF4O95639 YBX1P4-201ENST00000392794 808 ntBASIC21.25■□□□□ 0.99
CPSF4O95639 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
CPSF4O95639 LSM7-203ENST00000585409 512 ntTSL 2 BASIC21.25■□□□□ 0.99
CPSF4O95639 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CPSF4O95639 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CPSF4O95639 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CPSF4O95639 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CPSF4O95639 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CPSF4O95639 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CPSF4O95639 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
CPSF4O95639 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC21.24■□□□□ 0.99
CPSF4O95639 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CPSF4O95639 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CPSF4O95639 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CPSF4O95639 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CPSF4O95639 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CPSF4O95639 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
CPSF4O95639 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CPSF4O95639 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CPSF4O95639 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CPSF4O95639 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CPSF4O95639 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CPSF4O95639 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CPSF4O95639 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
CPSF4O95639 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CPSF4O95639 EP400NL-214ENST00000641289 2402 ntBASIC21.23■□□□□ 0.99
CPSF4O95639 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC21.23■□□□□ 0.99
CPSF4O95639 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
CPSF4O95639 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CPSF4O95639 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
CPSF4O95639 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC21.22■□□□□ 0.99
CPSF4O95639 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CPSF4O95639 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
CPSF4O95639 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CPSF4O95639 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CPSF4O95639 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
CPSF4O95639 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CPSF4O95639 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CPSF4O95639 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC21.22■□□□□ 0.99
CPSF4O95639 AC103724.3-201ENST00000564481 992 ntBASIC21.22■□□□□ 0.99
CPSF4O95639 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CPSF4O95639 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CPSF4O95639 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC21.22■□□□□ 0.99
CPSF4O95639 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
CPSF4O95639 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
CPSF4O95639 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CPSF4O95639 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
CPSF4O95639 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CPSF4O95639 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CPSF4O95639 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CPSF4O95639 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC21.21■□□□□ 0.99
CPSF4O95639 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
CPSF4O95639 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CPSF4O95639 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
CPSF4O95639 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CPSF4O95639 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC21.2■□□□□ 0.99
CPSF4O95639 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CPSF4O95639 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CPSF4O95639 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC21.2■□□□□ 0.98
CPSF4O95639 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CPSF4O95639 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC21.19■□□□□ 0.98
CPSF4O95639 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
CPSF4O95639 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CPSF4O95639 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC21.19■□□□□ 0.98
CPSF4O95639 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms