Protein–RNA interactions for Protein: O75631

UPK3A, Uroplakin-3a, humanhuman

Predictions only

Length 287 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3AO75631 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
UPK3AO75631 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
UPK3AO75631 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC20.07■□□□□ 0.8
UPK3AO75631 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC20.07■□□□□ 0.8
UPK3AO75631 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC20.07■□□□□ 0.8
UPK3AO75631 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
UPK3AO75631 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
UPK3AO75631 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
UPK3AO75631 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
UPK3AO75631 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
UPK3AO75631 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
UPK3AO75631 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC20.06■□□□□ 0.8
UPK3AO75631 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
UPK3AO75631 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
UPK3AO75631 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
UPK3AO75631 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
UPK3AO75631 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
UPK3AO75631 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
UPK3AO75631 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
UPK3AO75631 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
UPK3AO75631 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
UPK3AO75631 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
UPK3AO75631 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC20.05■□□□□ 0.8
UPK3AO75631 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
UPK3AO75631 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
UPK3AO75631 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
UPK3AO75631 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
UPK3AO75631 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
UPK3AO75631 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
UPK3AO75631 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
UPK3AO75631 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
UPK3AO75631 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
UPK3AO75631 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC20.04■□□□□ 0.8
UPK3AO75631 AC233723.2-201ENST00000623798 2106 ntBASIC20.04■□□□□ 0.8
UPK3AO75631 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
UPK3AO75631 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
UPK3AO75631 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
UPK3AO75631 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC20.04■□□□□ 0.8
UPK3AO75631 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC20.04■□□□□ 0.8
UPK3AO75631 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
UPK3AO75631 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
UPK3AO75631 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
UPK3AO75631 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC20.03■□□□□ 0.8
UPK3AO75631 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
UPK3AO75631 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
UPK3AO75631 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
UPK3AO75631 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
UPK3AO75631 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC20.03■□□□□ 0.8
UPK3AO75631 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
UPK3AO75631 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
UPK3AO75631 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
UPK3AO75631 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
UPK3AO75631 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
UPK3AO75631 H19-210ENST00000439725 1929 ntTSL 2 BASIC20.03■□□□□ 0.8
UPK3AO75631 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
UPK3AO75631 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
UPK3AO75631 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC20.03■□□□□ 0.8
UPK3AO75631 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC20.03■□□□□ 0.8
UPK3AO75631 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
UPK3AO75631 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC20.03■□□□□ 0.8
UPK3AO75631 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC20.02■□□□□ 0.8
UPK3AO75631 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
UPK3AO75631 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC20.02■□□□□ 0.8
UPK3AO75631 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
UPK3AO75631 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
UPK3AO75631 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
UPK3AO75631 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
UPK3AO75631 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC20.02■□□□□ 0.79
UPK3AO75631 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.79
UPK3AO75631 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.79
UPK3AO75631 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
UPK3AO75631 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
UPK3AO75631 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC20.02■□□□□ 0.79
UPK3AO75631 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
UPK3AO75631 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
UPK3AO75631 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC20.01■□□□□ 0.79
UPK3AO75631 AK3-203ENST00000447596 705 ntTSL 2 BASIC20.01■□□□□ 0.79
UPK3AO75631 AL117332.1-201ENST00000622628 974 ntBASIC20.01■□□□□ 0.79
UPK3AO75631 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
UPK3AO75631 C1orf229-201ENST00000623686 2258 ntBASIC20.01■□□□□ 0.79
UPK3AO75631 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
UPK3AO75631 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
UPK3AO75631 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
UPK3AO75631 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
UPK3AO75631 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC20■□□□□ 0.79
UPK3AO75631 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC20■□□□□ 0.79
UPK3AO75631 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
UPK3AO75631 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC20■□□□□ 0.79
UPK3AO75631 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
UPK3AO75631 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC20■□□□□ 0.79
UPK3AO75631 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC20■□□□□ 0.79
UPK3AO75631 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
UPK3AO75631 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
UPK3AO75631 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
UPK3AO75631 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
UPK3AO75631 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
UPK3AO75631 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
UPK3AO75631 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC19.99■□□□□ 0.79
UPK3AO75631 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC19.99■□□□□ 0.79
UPK3AO75631 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms