Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
TRIM13O60858 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
TRIM13O60858 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC22.04■■□□□ 1.12
TRIM13O60858 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC22.04■■□□□ 1.12
TRIM13O60858 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
TRIM13O60858 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
TRIM13O60858 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC22.03■■□□□ 1.12
TRIM13O60858 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC22.03■■□□□ 1.12
TRIM13O60858 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC22.03■■□□□ 1.12
TRIM13O60858 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
TRIM13O60858 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC22.03■■□□□ 1.12
TRIM13O60858 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
TRIM13O60858 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
TRIM13O60858 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
TRIM13O60858 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC22.03■■□□□ 1.12
TRIM13O60858 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC22.03■■□□□ 1.12
TRIM13O60858 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
TRIM13O60858 HSD17B1P1-201ENST00000590052 955 ntBASIC22.03■■□□□ 1.12
TRIM13O60858 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
TRIM13O60858 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC22.03■■□□□ 1.12
TRIM13O60858 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC22.03■■□□□ 1.12
TRIM13O60858 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC22.02■■□□□ 1.12
TRIM13O60858 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
TRIM13O60858 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
TRIM13O60858 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
TRIM13O60858 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
TRIM13O60858 DUX4L18-201ENST00000553347 1267 ntBASIC22.02■■□□□ 1.12
TRIM13O60858 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC22.02■■□□□ 1.12
TRIM13O60858 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
TRIM13O60858 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC22.02■■□□□ 1.12
TRIM13O60858 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.12
TRIM13O60858 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.12
TRIM13O60858 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
TRIM13O60858 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
TRIM13O60858 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
TRIM13O60858 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC22.02■■□□□ 1.11
TRIM13O60858 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.11
TRIM13O60858 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
TRIM13O60858 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.11
TRIM13O60858 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC22.01■■□□□ 1.11
TRIM13O60858 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
TRIM13O60858 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC22.01■■□□□ 1.11
TRIM13O60858 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC22.01■■□□□ 1.11
TRIM13O60858 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
TRIM13O60858 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC22.01■■□□□ 1.11
TRIM13O60858 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
TRIM13O60858 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
TRIM13O60858 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC22.01■■□□□ 1.11
TRIM13O60858 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
TRIM13O60858 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC22■■□□□ 1.11
TRIM13O60858 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
TRIM13O60858 AL353803.4-201ENST00000565882 1934 ntBASIC22■■□□□ 1.11
TRIM13O60858 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC22■■□□□ 1.11
TRIM13O60858 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC22■■□□□ 1.11
TRIM13O60858 IDNK-201ENST00000376417 511 ntTSL 5 BASIC22■■□□□ 1.11
TRIM13O60858 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
TRIM13O60858 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC22■■□□□ 1.11
TRIM13O60858 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC22■■□□□ 1.11
TRIM13O60858 AC004448.1-201ENST00000458332 883 ntBASIC22■■□□□ 1.11
TRIM13O60858 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
TRIM13O60858 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC22■■□□□ 1.11
TRIM13O60858 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
TRIM13O60858 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC22■■□□□ 1.11
TRIM13O60858 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC22■■□□□ 1.11
TRIM13O60858 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC22■■□□□ 1.11
TRIM13O60858 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC21.99■■□□□ 1.11
TRIM13O60858 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
TRIM13O60858 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC21.99■■□□□ 1.11
TRIM13O60858 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
TRIM13O60858 KRT18P24-201ENST00000344739 1156 ntBASIC21.99■■□□□ 1.11
TRIM13O60858 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
TRIM13O60858 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
TRIM13O60858 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
TRIM13O60858 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
TRIM13O60858 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
TRIM13O60858 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
TRIM13O60858 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
TRIM13O60858 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
TRIM13O60858 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
TRIM13O60858 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC21.98■■□□□ 1.11
TRIM13O60858 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
TRIM13O60858 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC21.98■■□□□ 1.11
TRIM13O60858 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC21.98■■□□□ 1.11
TRIM13O60858 WWC2-AS2-201ENST00000578387 2183 ntBASIC21.97■■□□□ 1.11
TRIM13O60858 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
TRIM13O60858 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC21.97■■□□□ 1.11
TRIM13O60858 MIR4281-201ENST00000580852 62 ntBASIC21.97■■□□□ 1.11
TRIM13O60858 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
TRIM13O60858 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC21.97■■□□□ 1.11
TRIM13O60858 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
TRIM13O60858 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC21.97■■□□□ 1.11
TRIM13O60858 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
TRIM13O60858 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC21.97■■□□□ 1.11
TRIM13O60858 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
TRIM13O60858 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
TRIM13O60858 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
TRIM13O60858 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
TRIM13O60858 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
TRIM13O60858 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC21.96■■□□□ 1.11
TRIM13O60858 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC21.96■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms