Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC19.71■□□□□ 0.75
SGCEO43556 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC19.71■□□□□ 0.75
SGCEO43556 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC19.71■□□□□ 0.75
SGCEO43556 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
SGCEO43556 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC19.71■□□□□ 0.75
SGCEO43556 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
SGCEO43556 AC010997.5-201ENST00000609182 354 ntBASIC19.71■□□□□ 0.75
SGCEO43556 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
SGCEO43556 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SGCEO43556 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
SGCEO43556 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SGCEO43556 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SGCEO43556 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SGCEO43556 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC19.71■□□□□ 0.75
SGCEO43556 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC19.7■□□□□ 0.74
SGCEO43556 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SGCEO43556 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SGCEO43556 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SGCEO43556 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SGCEO43556 EXOG-217ENST00000630638 197 ntTSL 5 BASIC19.7■□□□□ 0.74
SGCEO43556 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SGCEO43556 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SGCEO43556 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
SGCEO43556 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
SGCEO43556 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SGCEO43556 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC19.7■□□□□ 0.74
SGCEO43556 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
SGCEO43556 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
SGCEO43556 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
SGCEO43556 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC19.69■□□□□ 0.74
SGCEO43556 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SGCEO43556 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
SGCEO43556 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC19.69■□□□□ 0.74
SGCEO43556 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
SGCEO43556 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SGCEO43556 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SGCEO43556 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SGCEO43556 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SGCEO43556 CD72-202ENST00000378430 585 ntTSL 3 BASIC19.69■□□□□ 0.74
SGCEO43556 HES6-204ENST00000409182 863 ntTSL 2 BASIC19.69■□□□□ 0.74
SGCEO43556 OR2A1-AS1-204ENST00000470435 602 ntBASIC19.69■□□□□ 0.74
SGCEO43556 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC19.69■□□□□ 0.74
SGCEO43556 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC19.69■□□□□ 0.74
SGCEO43556 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SGCEO43556 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SGCEO43556 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SGCEO43556 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC19.68■□□□□ 0.74
SGCEO43556 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
SGCEO43556 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
SGCEO43556 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SGCEO43556 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SGCEO43556 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SGCEO43556 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SGCEO43556 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC19.68■□□□□ 0.74
SGCEO43556 CREM-229ENST00000474362 1030 ntTSL 2 BASIC19.68■□□□□ 0.74
SGCEO43556 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC19.68■□□□□ 0.74
SGCEO43556 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SGCEO43556 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SGCEO43556 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
SGCEO43556 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
SGCEO43556 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
SGCEO43556 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SGCEO43556 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
SGCEO43556 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SGCEO43556 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SGCEO43556 AC079630.1-202ENST00000618127 1840 ntBASIC19.67■□□□□ 0.74
SGCEO43556 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SGCEO43556 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SGCEO43556 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
SGCEO43556 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
SGCEO43556 UNC93B8-201ENST00000511903 705 ntBASIC19.66■□□□□ 0.74
SGCEO43556 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
SGCEO43556 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
SGCEO43556 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
SGCEO43556 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
SGCEO43556 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
SGCEO43556 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SGCEO43556 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SGCEO43556 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC19.66■□□□□ 0.74
SGCEO43556 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
SGCEO43556 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC19.65■□□□□ 0.74
SGCEO43556 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SGCEO43556 DUSP8P3-201ENST00000399571 1760 ntBASIC19.65■□□□□ 0.74
SGCEO43556 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC19.65■□□□□ 0.74
SGCEO43556 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SGCEO43556 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC19.65■□□□□ 0.74
SGCEO43556 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SGCEO43556 TFPT-201ENST00000391757 774 ntTSL 5 BASIC19.65■□□□□ 0.74
SGCEO43556 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
SGCEO43556 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC19.65■□□□□ 0.74
SGCEO43556 TRIR-205ENST00000592273 783 ntTSL 3 BASIC19.65■□□□□ 0.74
SGCEO43556 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC19.65■□□□□ 0.74
SGCEO43556 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SGCEO43556 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SGCEO43556 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SGCEO43556 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
SGCEO43556 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
SGCEO43556 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SGCEO43556 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC19.64■□□□□ 0.73
SGCEO43556 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC19.64■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms