Protein–RNA interactions for Protein: O14562

UBFD1, Ubiquitin domain-containing protein UBFD1, humanhuman

Known RBP Predictions only

Length 309 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1O14562 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC21.8■■□□□ 1.08
UBFD1O14562 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC21.8■■□□□ 1.08
UBFD1O14562 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC21.8■■□□□ 1.08
UBFD1O14562 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
UBFD1O14562 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
UBFD1O14562 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
UBFD1O14562 AC012354.3-201ENST00000623734 483 ntBASIC21.8■■□□□ 1.08
UBFD1O14562 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
UBFD1O14562 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
UBFD1O14562 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC21.79■■□□□ 1.08
UBFD1O14562 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
UBFD1O14562 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC21.79■■□□□ 1.08
UBFD1O14562 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
UBFD1O14562 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
UBFD1O14562 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
UBFD1O14562 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC21.79■■□□□ 1.08
UBFD1O14562 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC21.79■■□□□ 1.08
UBFD1O14562 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
UBFD1O14562 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
UBFD1O14562 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC21.78■■□□□ 1.08
UBFD1O14562 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC21.78■■□□□ 1.08
UBFD1O14562 SNX5-217ENST00000606557 1087 ntBASIC21.78■■□□□ 1.08
UBFD1O14562 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC21.78■■□□□ 1.08
UBFD1O14562 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC21.78■■□□□ 1.08
UBFD1O14562 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
UBFD1O14562 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC21.77■■□□□ 1.08
UBFD1O14562 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC21.77■■□□□ 1.08
UBFD1O14562 AC103724.3-201ENST00000564481 992 ntBASIC21.77■■□□□ 1.08
UBFD1O14562 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC21.77■■□□□ 1.08
UBFD1O14562 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC21.77■■□□□ 1.08
UBFD1O14562 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
UBFD1O14562 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC21.77■■□□□ 1.08
UBFD1O14562 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
UBFD1O14562 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
UBFD1O14562 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC21.77■■□□□ 1.07
UBFD1O14562 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.07
UBFD1O14562 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC21.77■■□□□ 1.07
UBFD1O14562 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
UBFD1O14562 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC21.76■■□□□ 1.07
UBFD1O14562 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
UBFD1O14562 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
UBFD1O14562 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
UBFD1O14562 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC21.76■■□□□ 1.07
UBFD1O14562 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
UBFD1O14562 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
UBFD1O14562 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
UBFD1O14562 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
UBFD1O14562 KRT8P33-201ENST00000508125 1423 ntBASIC21.75■■□□□ 1.07
UBFD1O14562 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
UBFD1O14562 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC21.75■■□□□ 1.07
UBFD1O14562 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
UBFD1O14562 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
UBFD1O14562 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC21.75■■□□□ 1.07
UBFD1O14562 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
UBFD1O14562 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
UBFD1O14562 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
UBFD1O14562 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC21.74■■□□□ 1.07
UBFD1O14562 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
UBFD1O14562 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC21.74■■□□□ 1.07
UBFD1O14562 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
UBFD1O14562 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
UBFD1O14562 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
UBFD1O14562 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC21.74■■□□□ 1.07
UBFD1O14562 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
UBFD1O14562 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
UBFD1O14562 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
UBFD1O14562 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
UBFD1O14562 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC21.74■■□□□ 1.07
UBFD1O14562 LSM7-203ENST00000585409 512 ntTSL 2 BASIC21.74■■□□□ 1.07
UBFD1O14562 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC21.74■■□□□ 1.07
UBFD1O14562 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
UBFD1O14562 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
UBFD1O14562 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
UBFD1O14562 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
UBFD1O14562 ESRRAP2-201ENST00000418437 1549 ntBASIC21.74■■□□□ 1.07
UBFD1O14562 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
UBFD1O14562 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC21.74■■□□□ 1.07
UBFD1O14562 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
UBFD1O14562 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
UBFD1O14562 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC21.73■■□□□ 1.07
UBFD1O14562 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
UBFD1O14562 SENP5-202ENST00000419026 973 ntTSL 3 BASIC21.73■■□□□ 1.07
UBFD1O14562 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC21.73■■□□□ 1.07
UBFD1O14562 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC21.73■■□□□ 1.07
UBFD1O14562 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
UBFD1O14562 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
UBFD1O14562 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
UBFD1O14562 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
UBFD1O14562 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
UBFD1O14562 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC21.72■■□□□ 1.07
UBFD1O14562 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
UBFD1O14562 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
UBFD1O14562 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
UBFD1O14562 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
UBFD1O14562 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
UBFD1O14562 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC21.72■■□□□ 1.07
UBFD1O14562 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC21.72■■□□□ 1.07
UBFD1O14562 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
UBFD1O14562 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC21.72■■□□□ 1.07
UBFD1O14562 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC21.72■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms