Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC21.28■■□□□ 1
UPK1AO00322 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC21.28■■□□□ 1
UPK1AO00322 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC21.28■■□□□ 1
UPK1AO00322 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC21.28■■□□□ 1
UPK1AO00322 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC21.27■■□□□ 1
UPK1AO00322 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC21.27■■□□□ 1
UPK1AO00322 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
UPK1AO00322 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
UPK1AO00322 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
UPK1AO00322 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
UPK1AO00322 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC21.27■■□□□ 1
UPK1AO00322 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
UPK1AO00322 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
UPK1AO00322 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
UPK1AO00322 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC21.27■■□□□ 1
UPK1AO00322 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC21.27■■□□□ 1
UPK1AO00322 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC21.27■■□□□ 1
UPK1AO00322 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC21.27■■□□□ 1
UPK1AO00322 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC21.27■■□□□ 1
UPK1AO00322 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC21.27■■□□□ 1
UPK1AO00322 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC21.27■■□□□ 1
UPK1AO00322 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
UPK1AO00322 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■□□□□ 0.99
UPK1AO00322 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
UPK1AO00322 ECEL1P1-201ENST00000373592 1742 ntBASIC21.26■□□□□ 0.99
UPK1AO00322 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
UPK1AO00322 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
UPK1AO00322 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
UPK1AO00322 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC21.26■□□□□ 0.99
UPK1AO00322 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
UPK1AO00322 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
UPK1AO00322 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
UPK1AO00322 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC21.26■□□□□ 0.99
UPK1AO00322 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
UPK1AO00322 AL451085.2-201ENST00000605085 799 ntBASIC21.26■□□□□ 0.99
UPK1AO00322 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
UPK1AO00322 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
UPK1AO00322 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
UPK1AO00322 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC21.25■□□□□ 0.99
UPK1AO00322 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC21.25■□□□□ 0.99
UPK1AO00322 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
UPK1AO00322 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
UPK1AO00322 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
UPK1AO00322 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
UPK1AO00322 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
UPK1AO00322 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
UPK1AO00322 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
UPK1AO00322 AC137767.1-201ENST00000602918 1920 ntBASIC21.24■□□□□ 0.99
UPK1AO00322 AC127496.7-201ENST00000625110 1798 ntBASIC21.24■□□□□ 0.99
UPK1AO00322 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
UPK1AO00322 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC21.24■□□□□ 0.99
UPK1AO00322 AC009299.2-201ENST00000482477 511 ntBASIC21.24■□□□□ 0.99
UPK1AO00322 Z92544.1-202ENST00000571933 1220 ntBASIC21.24■□□□□ 0.99
UPK1AO00322 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
UPK1AO00322 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC21.24■□□□□ 0.99
UPK1AO00322 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
UPK1AO00322 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
UPK1AO00322 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC21.23■□□□□ 0.99
UPK1AO00322 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
UPK1AO00322 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
UPK1AO00322 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC21.23■□□□□ 0.99
UPK1AO00322 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
UPK1AO00322 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
UPK1AO00322 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
UPK1AO00322 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
UPK1AO00322 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
UPK1AO00322 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
UPK1AO00322 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC21.23■□□□□ 0.99
UPK1AO00322 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
UPK1AO00322 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC21.23■□□□□ 0.99
UPK1AO00322 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
UPK1AO00322 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
UPK1AO00322 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
UPK1AO00322 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC21.22■□□□□ 0.99
UPK1AO00322 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
UPK1AO00322 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC21.22■□□□□ 0.99
UPK1AO00322 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
UPK1AO00322 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC21.22■□□□□ 0.99
UPK1AO00322 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC21.22■□□□□ 0.99
UPK1AO00322 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC21.22■□□□□ 0.99
UPK1AO00322 CLTA-210ENST00000540080 989 ntTSL 2 BASIC21.22■□□□□ 0.99
UPK1AO00322 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC21.22■□□□□ 0.99
UPK1AO00322 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC21.22■□□□□ 0.99
UPK1AO00322 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC21.22■□□□□ 0.99
UPK1AO00322 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
UPK1AO00322 WWC2-AS2-201ENST00000578387 2183 ntBASIC21.21■□□□□ 0.99
UPK1AO00322 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC21.21■□□□□ 0.99
UPK1AO00322 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
UPK1AO00322 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
UPK1AO00322 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
UPK1AO00322 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
UPK1AO00322 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
UPK1AO00322 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
UPK1AO00322 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
UPK1AO00322 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC21.21■□□□□ 0.99
UPK1AO00322 KRT125P-201ENST00000546827 989 ntBASIC21.21■□□□□ 0.99
UPK1AO00322 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC21.21■□□□□ 0.99
UPK1AO00322 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC21.21■□□□□ 0.99
UPK1AO00322 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
UPK1AO00322 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms