Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 AC069152.1-201ENST00000438030 544 ntBASIC20.46■□□□□ 0.87
COL6A6A6NMZ7 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
COL6A6A6NMZ7 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
COL6A6A6NMZ7 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC20.46■□□□□ 0.87
COL6A6A6NMZ7 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL6A6A6NMZ7 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC20.46■□□□□ 0.87
COL6A6A6NMZ7 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
COL6A6A6NMZ7 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
COL6A6A6NMZ7 COX20-201ENST00000366528 568 ntTSL 2 BASIC20.45■□□□□ 0.86
COL6A6A6NMZ7 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC20.45■□□□□ 0.86
COL6A6A6NMZ7 GUSBP6-202ENST00000438529 1198 ntBASIC20.45■□□□□ 0.86
COL6A6A6NMZ7 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC20.45■□□□□ 0.86
COL6A6A6NMZ7 ST7-202ENST00000323984 2142 ntTSL 5 BASIC20.45■□□□□ 0.86
COL6A6A6NMZ7 ST7-207ENST00000393449 2127 ntTSL 5 BASIC20.45■□□□□ 0.86
COL6A6A6NMZ7 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
COL6A6A6NMZ7 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL6A6A6NMZ7 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL6A6A6NMZ7 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC20.44■□□□□ 0.86
COL6A6A6NMZ7 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
COL6A6A6NMZ7 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
COL6A6A6NMZ7 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
COL6A6A6NMZ7 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL6A6A6NMZ7 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
COL6A6A6NMZ7 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL6A6A6NMZ7 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
COL6A6A6NMZ7 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
COL6A6A6NMZ7 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC20.44■□□□□ 0.86
COL6A6A6NMZ7 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
COL6A6A6NMZ7 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC20.43■□□□□ 0.86
COL6A6A6NMZ7 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
COL6A6A6NMZ7 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL6A6A6NMZ7 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
COL6A6A6NMZ7 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
COL6A6A6NMZ7 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL6A6A6NMZ7 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
COL6A6A6NMZ7 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC20.43■□□□□ 0.86
COL6A6A6NMZ7 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC20.43■□□□□ 0.86
COL6A6A6NMZ7 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL6A6A6NMZ7 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
COL6A6A6NMZ7 SHD-204ENST00000599689 1729 ntTSL 5 BASIC20.43■□□□□ 0.86
COL6A6A6NMZ7 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC20.43■□□□□ 0.86
COL6A6A6NMZ7 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
COL6A6A6NMZ7 MDK-213ENST00000617138 635 ntTSL 2 BASIC20.42■□□□□ 0.86
COL6A6A6NMZ7 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL6A6A6NMZ7 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL6A6A6NMZ7 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL6A6A6NMZ7 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
COL6A6A6NMZ7 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL6A6A6NMZ7 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL6A6A6NMZ7 MFSD11-216ENST00000590393 1141 ntBASIC20.42■□□□□ 0.86
COL6A6A6NMZ7 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
COL6A6A6NMZ7 TBCB-214ENST00000629269 413 ntTSL 5 BASIC20.42■□□□□ 0.86
COL6A6A6NMZ7 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC20.42■□□□□ 0.86
COL6A6A6NMZ7 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
COL6A6A6NMZ7 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL6A6A6NMZ7 PKM-203ENST00000389093 2279 ntTSL 5 BASIC20.41■□□□□ 0.86
COL6A6A6NMZ7 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC20.41■□□□□ 0.86
COL6A6A6NMZ7 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL6A6A6NMZ7 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL6A6A6NMZ7 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC20.41■□□□□ 0.86
COL6A6A6NMZ7 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC20.41■□□□□ 0.86
COL6A6A6NMZ7 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC20.41■□□□□ 0.86
COL6A6A6NMZ7 AC010525.1-201ENST00000585559 441 ntBASIC20.41■□□□□ 0.86
COL6A6A6NMZ7 AL050303.2-201ENST00000619798 666 ntBASIC20.41■□□□□ 0.86
COL6A6A6NMZ7 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
COL6A6A6NMZ7 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
COL6A6A6NMZ7 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL6A6A6NMZ7 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL6A6A6NMZ7 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL6A6A6NMZ7 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL6A6A6NMZ7 AL022069.1-201ENST00000568025 1636 ntBASIC20.4■□□□□ 0.86
COL6A6A6NMZ7 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC20.4■□□□□ 0.86
COL6A6A6NMZ7 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL6A6A6NMZ7 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
COL6A6A6NMZ7 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
COL6A6A6NMZ7 FAM201B-201ENST00000458407 597 ntBASIC20.39■□□□□ 0.86
COL6A6A6NMZ7 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC20.39■□□□□ 0.86
COL6A6A6NMZ7 ITM2C-210ENST00000620962 501 ntBASIC20.39■□□□□ 0.86
COL6A6A6NMZ7 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
COL6A6A6NMZ7 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
COL6A6A6NMZ7 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL6A6A6NMZ7 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL6A6A6NMZ7 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
COL6A6A6NMZ7 SLC7A5P2-201ENST00000553010 536 ntBASIC20.39■□□□□ 0.85
COL6A6A6NMZ7 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC20.39■□□□□ 0.85
COL6A6A6NMZ7 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL6A6A6NMZ7 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC20.38■□□□□ 0.85
COL6A6A6NMZ7 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC20.38■□□□□ 0.85
COL6A6A6NMZ7 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL6A6A6NMZ7 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL6A6A6NMZ7 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
COL6A6A6NMZ7 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC20.38■□□□□ 0.85
COL6A6A6NMZ7 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC20.38■□□□□ 0.85
COL6A6A6NMZ7 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL6A6A6NMZ7 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC20.38■□□□□ 0.85
COL6A6A6NMZ7 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
COL6A6A6NMZ7 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL6A6A6NMZ7 USF2-207ENST00000595068 1612 ntTSL 5 BASIC20.37■□□□□ 0.85
COL6A6A6NMZ7 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC20.37■□□□□ 0.85
COL6A6A6NMZ7 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC20.37■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms