Protein–RNA interactions for Protein: A0A0B4J276

TRAV25, T-cell receptor alpha variable 25 (Fragment), humanhuman

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV25A0A0B4J276 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TRAV25A0A0B4J276 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC16.82■□□□□ 0.28
TRAV25A0A0B4J276 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC16.82■□□□□ 0.28
TRAV25A0A0B4J276 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRAV25A0A0B4J276 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRAV25A0A0B4J276 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRAV25A0A0B4J276 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC16.81■□□□□ 0.28
TRAV25A0A0B4J276 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
TRAV25A0A0B4J276 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRAV25A0A0B4J276 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRAV25A0A0B4J276 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRAV25A0A0B4J276 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
TRAV25A0A0B4J276 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRAV25A0A0B4J276 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
TRAV25A0A0B4J276 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRAV25A0A0B4J276 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC16.81■□□□□ 0.28
TRAV25A0A0B4J276 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRAV25A0A0B4J276 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
TRAV25A0A0B4J276 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC16.8■□□□□ 0.28
TRAV25A0A0B4J276 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRAV25A0A0B4J276 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRAV25A0A0B4J276 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC16.8■□□□□ 0.28
TRAV25A0A0B4J276 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TRAV25A0A0B4J276 AC011298.3-201ENST00000615796 283 ntBASIC16.8■□□□□ 0.28
TRAV25A0A0B4J276 RALB-208ENST00000631312 311 ntTSL 5 BASIC16.8■□□□□ 0.28
TRAV25A0A0B4J276 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRAV25A0A0B4J276 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC16.8■□□□□ 0.28
TRAV25A0A0B4J276 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRAV25A0A0B4J276 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TRAV25A0A0B4J276 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRAV25A0A0B4J276 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TRAV25A0A0B4J276 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TRAV25A0A0B4J276 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
TRAV25A0A0B4J276 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
TRAV25A0A0B4J276 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRAV25A0A0B4J276 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRAV25A0A0B4J276 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRAV25A0A0B4J276 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
TRAV25A0A0B4J276 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC16.78■□□□□ 0.28
TRAV25A0A0B4J276 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC16.78■□□□□ 0.28
TRAV25A0A0B4J276 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TRAV25A0A0B4J276 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRAV25A0A0B4J276 AC079630.1-202ENST00000618127 1840 ntBASIC16.78■□□□□ 0.28
TRAV25A0A0B4J276 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRAV25A0A0B4J276 UNC93B3-201ENST00000308076 687 ntBASIC16.78■□□□□ 0.28
TRAV25A0A0B4J276 NALT1-201ENST00000429224 738 ntTSL 5 BASIC16.78■□□□□ 0.28
TRAV25A0A0B4J276 AC096631.2-201ENST00000436136 790 ntBASIC16.78■□□□□ 0.28
TRAV25A0A0B4J276 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TRAV25A0A0B4J276 AL139246.5-201ENST00000606645 996 ntBASIC16.78■□□□□ 0.28
TRAV25A0A0B4J276 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC16.78■□□□□ 0.28
TRAV25A0A0B4J276 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TRAV25A0A0B4J276 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRAV25A0A0B4J276 AC092068.2-201ENST00000590491 1708 ntBASIC16.78■□□□□ 0.28
TRAV25A0A0B4J276 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC16.78■□□□□ 0.28
TRAV25A0A0B4J276 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
TRAV25A0A0B4J276 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC16.77■□□□□ 0.28
TRAV25A0A0B4J276 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
TRAV25A0A0B4J276 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC16.77■□□□□ 0.28
TRAV25A0A0B4J276 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
TRAV25A0A0B4J276 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRAV25A0A0B4J276 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRAV25A0A0B4J276 PTCHD3P2-201ENST00000424937 1205 ntBASIC16.77■□□□□ 0.28
TRAV25A0A0B4J276 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC16.77■□□□□ 0.28
TRAV25A0A0B4J276 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC16.77■□□□□ 0.28
TRAV25A0A0B4J276 AL499627.2-201ENST00000606283 725 ntBASIC16.77■□□□□ 0.28
TRAV25A0A0B4J276 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC16.77■□□□□ 0.28
TRAV25A0A0B4J276 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRAV25A0A0B4J276 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRAV25A0A0B4J276 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC16.77■□□□□ 0.28
TRAV25A0A0B4J276 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC16.77■□□□□ 0.27
TRAV25A0A0B4J276 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
TRAV25A0A0B4J276 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
TRAV25A0A0B4J276 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
TRAV25A0A0B4J276 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
TRAV25A0A0B4J276 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
TRAV25A0A0B4J276 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.27
TRAV25A0A0B4J276 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
TRAV25A0A0B4J276 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC16.77■□□□□ 0.27
TRAV25A0A0B4J276 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
TRAV25A0A0B4J276 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRAV25A0A0B4J276 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRAV25A0A0B4J276 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRAV25A0A0B4J276 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC16.76■□□□□ 0.27
TRAV25A0A0B4J276 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRAV25A0A0B4J276 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRAV25A0A0B4J276 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC16.76■□□□□ 0.27
TRAV25A0A0B4J276 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRAV25A0A0B4J276 SERBP1P1-201ENST00000396021 1160 ntBASIC16.76■□□□□ 0.27
TRAV25A0A0B4J276 HES6-206ENST00000409574 738 ntTSL 2 BASIC16.76■□□□□ 0.27
TRAV25A0A0B4J276 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC16.76■□□□□ 0.27
TRAV25A0A0B4J276 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC16.76■□□□□ 0.27
TRAV25A0A0B4J276 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRAV25A0A0B4J276 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRAV25A0A0B4J276 AC133561.4-201ENST00000566112 224 ntBASIC16.76■□□□□ 0.27
TRAV25A0A0B4J276 AL136162.1-201ENST00000607711 1078 ntBASIC16.76■□□□□ 0.27
TRAV25A0A0B4J276 pRNA.6-201ENST00000610482 90 ntBASIC16.76■□□□□ 0.27
TRAV25A0A0B4J276 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
TRAV25A0A0B4J276 pRNA.5-201ENST00000612139 90 ntBASIC16.76■□□□□ 0.27
TRAV25A0A0B4J276 pRNA.11-201ENST00000618423 90 ntBASIC16.76■□□□□ 0.27
TRAV25A0A0B4J276 pRNA.13-201ENST00000619112 90 ntBASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 16.1 ms