Protein–RNA interactions for Protein: P25846

MSH1, DNA mismatch repair protein MSH1, mitochondrial, yeastyeast

Predictions only

Length 959 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
MSH1P25846 YKR005CYKR005C 1578 nt11.45□□□□□ -0.58
MSH1P25846 BMT6YLR063W 1098 nt11.44□□□□□ -0.58
MSH1P25846 SNG1YGR197C 1644 nt11.44□□□□□ -0.58
MSH1P25846 PBP1YGR178C 2169 nt11.43□□□□□ -0.58
MSH1P25846 MXR2YCL033C 507 nt11.42□□□□□ -0.58
MSH1P25846 YIH1YCR059C 777 nt11.41□□□□□ -0.58
MSH1P25846 MRPL8YJL063C 717 nt11.38□□□□□ -0.59
MSH1P25846 CYT2YKL087C 675 nt11.36□□□□□ -0.59
MSH1P25846 SOR2YDL246C 1074 nt11.34□□□□□ -0.59
MSH1P25846 SOR1YJR159W 1074 nt11.34□□□□□ -0.59
MSH1P25846 SPP1YPL138C 1062 nt11.33□□□□□ -0.6
MSH1P25846 DUS1YML080W 1272 nt11.32□□□□□ -0.6
MSH1P25846 RNQ1YCL028W 1218 nt11.32□□□□□ -0.6
MSH1P25846 YCL042WYCL042W 360 nt11.32□□□□□ -0.6
MSH1P25846 AGP1YCL025C 1902 nt11.32□□□□□ -0.6
MSH1P25846 TRM5YHR070W 1500 nt11.31□□□□□ -0.6
MSH1P25846 WSC2YNL283C 1512 nt11.3□□□□□ -0.6
MSH1P25846 YFL067WYFL067W 528 nt11.3□□□□□ -0.6
MSH1P25846 YGR259CYGR259C 441 nt11.3□□□□□ -0.6
MSH1P25846 ADO1YJR105W 1023 nt11.3□□□□□ -0.6
MSH1P25846 CMP2YML057W 1815 nt11.29□□□□□ -0.6
MSH1P25846 FTR1YER145C 1215 nt11.28□□□□□ -0.6
MSH1P25846 GAL1YBR020W 1587 nt11.26□□□□□ -0.61
MSH1P25846 DDR2YOL052C-A 186 nt11.25□□□□□ -0.61
MSH1P25846 FRD1YEL047C 1413 nt11.25□□□□□ -0.61
MSH1P25846 YCL074WYCL074W 927 nt11.24□□□□□ -0.61
MSH1P25846 IRC24YIR036C 792 nt11.22□□□□□ -0.61
MSH1P25846 BNA2YJR078W 1362 nt11.22□□□□□ -0.61
MSH1P25846 YDL086C-AYDL086C-A 435 nt11.21□□□□□ -0.61
MSH1P25846 YAT1YAR035W 2064 nt11.21□□□□□ -0.62
MSH1P25846 RTG1YOL067C 534 nt11.19□□□□□ -0.62
MSH1P25846 YLR235CYLR235C 399 nt11.16□□□□□ -0.62
MSH1P25846 ANP1YEL036C 1503 nt11.15□□□□□ -0.62
MSH1P25846 MIC12YBR262C 321 nt11.14□□□□□ -0.63
MSH1P25846 DIC1YLR348C 897 nt11.13□□□□□ -0.63
MSH1P25846 HSL7YBR133C 2484 nt11.13□□□□□ -0.63
MSH1P25846 RDN18-1RDN18-1 1800 nt11.12□□□□□ -0.63
MSH1P25846 RDN18-2RDN18-2 1800 nt11.12□□□□□ -0.63
MSH1P25846 HUA1YGR268C 597 nt11.12□□□□□ -0.63
MSH1P25846 HHO1YPL127C 777 nt11.11□□□□□ -0.63
MSH1P25846 PTH1YHR189W 573 nt11.08□□□□□ -0.64
MSH1P25846 YKL030WYKL030W 606 nt11.08□□□□□ -0.64
MSH1P25846 DUT1YBR252W 444 nt11.06□□□□□ -0.64
MSH1P25846 YDR524C-BYDR524C-B 201 nt11.04□□□□□ -0.64
MSH1P25846 FEN2YCR028C 1539 nt11.04□□□□□ -0.64
MSH1P25846 STR3YGL184C 1398 nt11.03□□□□□ -0.64
MSH1P25846 XDJ1YLR090W 1380 nt11.03□□□□□ -0.64
MSH1P25846 STB1YNL309W 1263 nt11.01□□□□□ -0.65
MSH1P25846 NDI1YML120C 1542 nt10.99□□□□□ -0.65
MSH1P25846 AQY2YLL052C 450 nt10.97□□□□□ -0.65
MSH1P25846 YIR016WYIR016W 798 nt10.96□□□□□ -0.65
MSH1P25846 TIM23YNR017W 669 nt10.95□□□□□ -0.66
MSH1P25846 SPC25YER018C 666 nt10.94□□□□□ -0.66
MSH1P25846 AQY1YPR192W 918 nt10.92□□□□□ -0.66
MSH1P25846 VPS60YDR486C 690 nt10.91□□□□□ -0.66
MSH1P25846 GPI16YHR188C 1833 nt10.9□□□□□ -0.66
MSH1P25846 YLR179CYLR179C 606 nt10.89□□□□□ -0.67
MSH1P25846 SPT20YOL148C 1815 nt10.88□□□□□ -0.67
MSH1P25846 ALG3YBL082C 1377 nt10.88□□□□□ -0.67
MSH1P25846 YGR201CYGR201C 678 nt10.86□□□□□ -0.67
MSH1P25846 YPR064WYPR064W 420 nt10.86□□□□□ -0.67
MSH1P25846 RPC82YPR190C 1965 nt10.85□□□□□ -0.67
MSH1P25846 GDH3YAL062W 1374 nt10.85□□□□□ -0.67
MSH1P25846 HEL2YDR266C 1920 nt10.84□□□□□ -0.67
MSH1P25846 YDR094WYDR094W 336 nt10.82□□□□□ -0.68
MSH1P25846 AVT6YER119C 1347 nt10.82□□□□□ -0.68
MSH1P25846 CCT4YDL143W 1587 nt10.82□□□□□ -0.68
MSH1P25846 tL(GAG)GtL(GAG)G 82 nt10.81□□□□□ -0.68
MSH1P25846 RTN2YDL204W 1182 nt10.8□□□□□ -0.68
MSH1P25846 UBX6YJL048C 1191 nt10.8□□□□□ -0.68
MSH1P25846 GOR1YNL274C 1053 nt10.78□□□□□ -0.68
MSH1P25846 RDN25-1RDN25-1 3396 nt10.77□□□□□ -0.68
MSH1P25846 RDN25-2RDN25-2 3396 nt10.77□□□□□ -0.68
MSH1P25846 INA1YLR413W 2028 nt10.77□□□□□ -0.68
MSH1P25846 SWC5YBR231C 912 nt10.77□□□□□ -0.69
MSH1P25846 RIM8YGL045W 1629 nt10.76□□□□□ -0.69
MSH1P25846 TAD3YLR316C 969 nt10.76□□□□□ -0.69
MSH1P25846 AHT1YHR093W 549 nt10.75□□□□□ -0.69
MSH1P25846 HIF1YLL022C 1158 nt10.74□□□□□ -0.69
MSH1P25846 PRM5YIL117C 957 nt10.7□□□□□ -0.7
MSH1P25846 MUP1YGR055W 1725 nt10.68□□□□□ -0.7
MSH1P25846 PLB1YMR008C 1995 nt10.68□□□□□ -0.7
MSH1P25846 ALD4YOR374W 1560 nt10.64□□□□□ -0.71
MSH1P25846 YFR018CYFR018C 1092 nt10.63□□□□□ -0.71
MSH1P25846 RPM1RPM1 483 nt10.61□□□□□ -0.71
MSH1P25846 RRT5YFR032C 870 nt10.6□□□□□ -0.71
MSH1P25846 YLR415CYLR415C 339 nt10.57□□□□□ -0.72
MSH1P25846 YGL114WYGL114W 2178 nt10.57□□□□□ -0.72
MSH1P25846 SHM2YLR058C 1410 nt10.53□□□□□ -0.72
MSH1P25846 HOL1YNR055C 1761 nt10.52□□□□□ -0.72
MSH1P25846 BDH1YAL060W 1149 nt10.52□□□□□ -0.73
MSH1P25846 PEX25YPL112C 1185 nt10.51□□□□□ -0.73
MSH1P25846 NBP35YGL091C 987 nt10.49□□□□□ -0.73
MSH1P25846 ARP6YLR085C 1317 nt10.49□□□□□ -0.73
MSH1P25846 UTR1YJR049C 1593 nt10.48□□□□□ -0.73
MSH1P25846 PAU16YKL224C 372 nt10.48□□□□□ -0.73
MSH1P25846 YSP3YOR003W 1437 nt10.48□□□□□ -0.73
MSH1P25846 YFL015W-AYFL015W-A 318 nt10.46□□□□□ -0.73
MSH1P25846 MAE1YKL029C 2010 nt10.46□□□□□ -0.74
MSH1P25846 PRE6YOL038W 765 nt10.44□□□□□ -0.74
Retrieved 100 of 7,029 protein–RNA pairs in 14.1 ms