Protein–RNA interactions for Protein: P25336

MSH3, DNA mismatch repair protein MSH3, yeastyeast

Predictions only

Length 1,018 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
MSH3P25336 RDN37-1RDN37-1 5354 nt12.01□□□□□ -0.49
MSH3P25336 RDN37-2RDN37-2 5354 nt12.01□□□□□ -0.49
MSH3P25336 DDR2YOL052C-A 186 nt12□□□□□ -0.49
MSH3P25336 TIM23YNR017W 669 nt11.98□□□□□ -0.49
MSH3P25336 AQY1YPR192W 918 nt11.98□□□□□ -0.49
MSH3P25336 YDL086C-AYDL086C-A 435 nt11.97□□□□□ -0.49
MSH3P25336 ANP1YEL036C 1503 nt11.95□□□□□ -0.5
MSH3P25336 RAX1YOR301W 1308 nt11.93□□□□□ -0.5
MSH3P25336 YLR179CYLR179C 606 nt11.92□□□□□ -0.5
MSH3P25336 HSP60YLR259C 1719 nt11.91□□□□□ -0.5
MSH3P25336 SPC25YER018C 666 nt11.91□□□□□ -0.5
MSH3P25336 YKL030WYKL030W 606 nt11.9□□□□□ -0.5
MSH3P25336 STB1YNL309W 1263 nt11.9□□□□□ -0.5
MSH3P25336 WSC2YNL283C 1512 nt11.87□□□□□ -0.51
MSH3P25336 YDR524C-BYDR524C-B 201 nt11.87□□□□□ -0.51
MSH3P25336 AHT1YHR093W 549 nt11.87□□□□□ -0.51
MSH3P25336 CCA1YER168C 1641 nt11.86□□□□□ -0.51
MSH3P25336 FEN2YCR028C 1539 nt11.84□□□□□ -0.51
MSH3P25336 RTG1YOL067C 534 nt11.83□□□□□ -0.52
MSH3P25336 GPI16YHR188C 1833 nt11.82□□□□□ -0.52
MSH3P25336 NME1NME1 340 nt11.8□□□□□ -0.52
MSH3P25336 MIC12YBR262C 321 nt11.8□□□□□ -0.52
MSH3P25336 CCT4YDL143W 1587 nt11.79□□□□□ -0.52
MSH3P25336 VPS60YDR486C 690 nt11.78□□□□□ -0.52
MSH3P25336 YPR064WYPR064W 420 nt11.77□□□□□ -0.53
MSH3P25336 BNA2YJR078W 1362 nt11.77□□□□□ -0.53
MSH3P25336 YIR016WYIR016W 798 nt11.75□□□□□ -0.53
MSH3P25336 ALG3YBL082C 1377 nt11.74□□□□□ -0.53
MSH3P25336 FUR4YBR021W 1902 nt11.73□□□□□ -0.53
MSH3P25336 TAD3YLR316C 969 nt11.72□□□□□ -0.53
MSH3P25336 NAR1YNL240C 1476 nt11.7□□□□□ -0.54
MSH3P25336 GLK1YCL040W 1503 nt11.7□□□□□ -0.54
MSH3P25336 AGP1YCL025C 1902 nt11.69□□□□□ -0.54
MSH3P25336 HSL7YBR133C 2484 nt11.68□□□□□ -0.54
MSH3P25336 SWC5YBR231C 912 nt11.66□□□□□ -0.54
MSH3P25336 HHO1YPL127C 777 nt11.65□□□□□ -0.54
MSH3P25336 MRPL8YJL063C 717 nt11.64□□□□□ -0.55
MSH3P25336 YEL076C-AYEL076C-A 651 nt11.62□□□□□ -0.55
MSH3P25336 YEL076CYEL076C 651 nt11.62□□□□□ -0.55
MSH3P25336 YLR464WYLR464W 651 nt11.62□□□□□ -0.55
MSH3P25336 BDH1YAL060W 1149 nt11.6□□□□□ -0.55
MSH3P25336 YGR201CYGR201C 678 nt11.59□□□□□ -0.55
MSH3P25336 XDJ1YLR090W 1380 nt11.56□□□□□ -0.56
MSH3P25336 tL(GAG)GtL(GAG)G 82 nt11.56□□□□□ -0.56
MSH3P25336 HUA1YGR268C 597 nt11.56□□□□□ -0.56
MSH3P25336 ADO1YJR105W 1023 nt11.56□□□□□ -0.56
MSH3P25336 PRP4YPR178W 1398 nt11.52□□□□□ -0.57
MSH3P25336 RDN25-1RDN25-1 3396 nt11.51□□□□□ -0.57
MSH3P25336 RDN25-2RDN25-2 3396 nt11.51□□□□□ -0.57
MSH3P25336 YCL074WYCL074W 927 nt11.51□□□□□ -0.57
MSH3P25336 YLR415CYLR415C 339 nt11.51□□□□□ -0.57
MSH3P25336 YGR139WYGR139W 339 nt11.49□□□□□ -0.57
MSH3P25336 DUS1YML080W 1272 nt11.49□□□□□ -0.57
MSH3P25336 DUT1YBR252W 444 nt11.49□□□□□ -0.57
MSH3P25336 YSP3YOR003W 1437 nt11.49□□□□□ -0.57
MSH3P25336 DPS1YLL018C 1674 nt11.46□□□□□ -0.57
MSH3P25336 YKR005CYKR005C 1578 nt11.45□□□□□ -0.58
MSH3P25336 GDH3YAL062W 1374 nt11.45□□□□□ -0.58
MSH3P25336 RDN18-1RDN18-1 1800 nt11.44□□□□□ -0.58
MSH3P25336 RDN18-2RDN18-2 1800 nt11.44□□□□□ -0.58
MSH3P25336 CMP2YML057W 1815 nt11.44□□□□□ -0.58
MSH3P25336 STR3YGL184C 1398 nt11.43□□□□□ -0.58
MSH3P25336 SHM2YLR058C 1410 nt11.43□□□□□ -0.58
MSH3P25336 AVT6YER119C 1347 nt11.42□□□□□ -0.58
MSH3P25336 PBP1YGR178C 2169 nt11.4□□□□□ -0.58
MSH3P25336 AAC1YMR056C 930 nt11.39□□□□□ -0.59
MSH3P25336 GOR1YNL274C 1053 nt11.39□□□□□ -0.59
MSH3P25336 YGR259CYGR259C 441 nt11.36□□□□□ -0.59
MSH3P25336 TIM17YJL143W 477 nt11.35□□□□□ -0.59
MSH3P25336 BMT6YLR063W 1098 nt11.35□□□□□ -0.59
MSH3P25336 HEL2YDR266C 1920 nt11.35□□□□□ -0.59
MSH3P25336 YNL115CYNL115C 1935 nt11.33□□□□□ -0.6
MSH3P25336 NIT1YIL164C 600 nt11.33□□□□□ -0.6
MSH3P25336 BIO5YNR056C 1686 nt11.33□□□□□ -0.6
MSH3P25336 CYT2YKL087C 675 nt11.32□□□□□ -0.6
MSH3P25336 SNF1YDR477W 1902 nt11.31□□□□□ -0.6
MSH3P25336 PEX25YPL112C 1185 nt11.31□□□□□ -0.6
MSH3P25336 DAT1YML113W 747 nt11.3□□□□□ -0.6
MSH3P25336 AQY2YLL052C 450 nt11.28□□□□□ -0.6
MSH3P25336 YFL066CYFL066C 1179 nt11.27□□□□□ -0.61
MSH3P25336 IRC24YIR036C 792 nt11.27□□□□□ -0.61
MSH3P25336 YFR018CYFR018C 1092 nt11.24□□□□□ -0.61
MSH3P25336 SGT2YOR007C 1041 nt11.24□□□□□ -0.61
MSH3P25336 VPS75YNL246W 795 nt11.22□□□□□ -0.61
MSH3P25336 RTN2YDL204W 1182 nt11.2□□□□□ -0.62
MSH3P25336 NBP35YGL091C 987 nt11.2□□□□□ -0.62
MSH3P25336 YCR102CYCR102C 1107 nt11.19□□□□□ -0.62
MSH3P25336 PRE6YOL038W 765 nt11.14□□□□□ -0.63
MSH3P25336 UBX6YJL048C 1191 nt11.12□□□□□ -0.63
MSH3P25336 RPM1RPM1 483 nt11.12□□□□□ -0.63
MSH3P25336 ARP6YLR085C 1317 nt11.11□□□□□ -0.63
MSH3P25336 YDR094WYDR094W 336 nt11.08□□□□□ -0.64
MSH3P25336 YAT1YAR035W 2064 nt11.08□□□□□ -0.64
MSH3P25336 PLB1YMR008C 1995 nt11.08□□□□□ -0.64
MSH3P25336 SFP1YLR403W 2052 nt11.05□□□□□ -0.64
MSH3P25336 TIR3YIL011W 810 nt11□□□□□ -0.65
MSH3P25336 YDR010CYDR010C 333 nt10.99□□□□□ -0.65
MSH3P25336 SHH4YLR164W 507 nt10.99□□□□□ -0.65
MSH3P25336 RRT5YFR032C 870 nt10.98□□□□□ -0.65
MSH3P25336 LSC2YGR244C 1284 nt10.98□□□□□ -0.65
Retrieved 100 of 7,029 protein–RNA pairs in 14.5 ms