Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
TRIM39Q9HCM9 AC006372.4-201ENST00000624122 1543 ntBASIC13.91□□□□□ -0.18
TRIM39Q9HCM9 DSTN-201ENST00000246069 3617 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
TRIM39Q9HCM9 PID1-202ENST00000392054 2745 ntTSL 2 BASIC13.91□□□□□ -0.18
TRIM39Q9HCM9 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
TRIM39Q9HCM9 FAM163B-201ENST00000356873 1131 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
TRIM39Q9HCM9 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC13.91□□□□□ -0.18
TRIM39Q9HCM9 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC13.91□□□□□ -0.18
TRIM39Q9HCM9 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC13.91□□□□□ -0.18
TRIM39Q9HCM9 AK2P2-201ENST00000439142 405 ntBASIC13.91□□□□□ -0.18
TRIM39Q9HCM9 AC098934.1-203ENST00000442868 1262 ntBASIC13.91□□□□□ -0.18
TRIM39Q9HCM9 FTLP1-201ENST00000449155 526 ntBASIC13.91□□□□□ -0.18
TRIM39Q9HCM9 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
TRIM39Q9HCM9 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC13.91□□□□□ -0.18
TRIM39Q9HCM9 AC130709.1-201ENST00000484779 1212 ntBASIC13.91□□□□□ -0.18
TRIM39Q9HCM9 RN7SL81P-201ENST00000493781 261 ntBASIC13.91□□□□□ -0.18
TRIM39Q9HCM9 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC13.91□□□□□ -0.18
TRIM39Q9HCM9 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC13.91□□□□□ -0.18
TRIM39Q9HCM9 AC011921.1-201ENST00000559739 557 ntTSL 4 BASIC13.91□□□□□ -0.18
TRIM39Q9HCM9 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC13.91□□□□□ -0.18
TRIM39Q9HCM9 PGPEP1-203ENST00000595066 762 ntTSL 2 BASIC13.91□□□□□ -0.18
TRIM39Q9HCM9 SIGLEC22P-201ENST00000599104 714 ntBASIC13.91□□□□□ -0.18
TRIM39Q9HCM9 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC13.91□□□□□ -0.18
TRIM39Q9HCM9 PRSS45-202ENST00000620911 1041 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
TRIM39Q9HCM9 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC13.91□□□□□ -0.18
TRIM39Q9HCM9 CMC2-224ENST00000630396 481 ntTSL 5 BASIC13.91□□□□□ -0.18
TRIM39Q9HCM9 AAMP-204ENST00000444053 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC13.91□□□□□ -0.18
TRIM39Q9HCM9 PPP6R2-202ENST00000359139 4035 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
TRIM39Q9HCM9 RPL18A-205ENST00000600147 1391 ntTSL 5 BASIC13.91□□□□□ -0.18
TRIM39Q9HCM9 GLB1L-202ENST00000392089 2574 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
TRIM39Q9HCM9 KCTD18-202ENST00000409157 2556 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
TRIM39Q9HCM9 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC13.91□□□□□ -0.18
TRIM39Q9HCM9 PRMT3-202ENST00000331079 2653 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
TRIM39Q9HCM9 ATP13A1-202ENST00000357324 3861 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
TRIM39Q9HCM9 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
TRIM39Q9HCM9 TBC1D9B-208ENST00000519746 2755 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
TRIM39Q9HCM9 MYD88-201ENST00000396334 2850 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
TRIM39Q9HCM9 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
TRIM39Q9HCM9 AC093797.1-201ENST00000411847 1789 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
TRIM39Q9HCM9 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC13.91□□□□□ -0.18
TRIM39Q9HCM9 HECTD1-203ENST00000553700 9080 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
TRIM39Q9HCM9 MCC-201ENST00000302475 8257 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
TRIM39Q9HCM9 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
TRIM39Q9HCM9 SLC20A2-207ENST00000520179 2284 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
TRIM39Q9HCM9 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC13.9□□□□□ -0.18
TRIM39Q9HCM9 OSBPL1A-201ENST00000319481 4195 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
TRIM39Q9HCM9 CTSS-202ENST00000448301 1421 ntTSL 2 BASIC13.9□□□□□ -0.18
TRIM39Q9HCM9 SNAP91-215ENST00000521743 4263 ntAPPRIS P2 TSL 5 BASIC13.9□□□□□ -0.18
TRIM39Q9HCM9 PCDH8-201ENST00000338862 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
TRIM39Q9HCM9 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
TRIM39Q9HCM9 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
TRIM39Q9HCM9 SLC25A31-201ENST00000281154 1841 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
TRIM39Q9HCM9 VIPAS39-208ENST00000556412 1832 ntTSL 2 BASIC13.9□□□□□ -0.18
TRIM39Q9HCM9 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC13.9□□□□□ -0.18
TRIM39Q9HCM9 PCDHA2-202ENST00000520672 3056 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
TRIM39Q9HCM9 CTBP1-AS2-206ENST00000581398 5652 ntBASIC13.9□□□□□ -0.18
TRIM39Q9HCM9 PPP1R3D-201ENST00000370996 3630 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
TRIM39Q9HCM9 SEC61B-201ENST00000223641 545 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
TRIM39Q9HCM9 EIF3F-201ENST00000309828 1254 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
TRIM39Q9HCM9 MT1H-201ENST00000332374 397 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
TRIM39Q9HCM9 LY6G6E-227ENST00000409239 776 ntAPPRIS ALT2 TSL 4 BASIC13.9□□□□□ -0.18
TRIM39Q9HCM9 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC13.9□□□□□ -0.18
TRIM39Q9HCM9 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC13.9□□□□□ -0.18
TRIM39Q9HCM9 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
TRIM39Q9HCM9 TEX36-AS1-202ENST00000446081 749 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
TRIM39Q9HCM9 AC018638.5-201ENST00000450885 754 ntBASIC13.9□□□□□ -0.18
TRIM39Q9HCM9 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC13.9□□□□□ -0.18
TRIM39Q9HCM9 AC108462.1-201ENST00000457467 850 ntTSL 3 BASIC13.9□□□□□ -0.18
TRIM39Q9HCM9 SEC61B-203ENST00000498603 587 ntTSL 3 BASIC13.9□□□□□ -0.18
TRIM39Q9HCM9 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
TRIM39Q9HCM9 POLD4-208ENST00000532830 904 ntTSL 3 BASIC13.9□□□□□ -0.18
TRIM39Q9HCM9 EIF2B1-205ENST00000539951 848 ntTSL 5 BASIC13.9□□□□□ -0.18
TRIM39Q9HCM9 AC026310.2-201ENST00000546353 728 ntTSL 4 BASIC13.9□□□□□ -0.18
TRIM39Q9HCM9 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC13.9□□□□□ -0.18
TRIM39Q9HCM9 AC138701.2-201ENST00000553634 226 ntBASIC13.9□□□□□ -0.18
TRIM39Q9HCM9 AC145285.5-201ENST00000562217 361 ntBASIC13.9□□□□□ -0.18
TRIM39Q9HCM9 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC13.9□□□□□ -0.18
TRIM39Q9HCM9 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC13.9□□□□□ -0.18
TRIM39Q9HCM9 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC13.9□□□□□ -0.18
TRIM39Q9HCM9 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC13.9□□□□□ -0.18
TRIM39Q9HCM9 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC13.9□□□□□ -0.18
TRIM39Q9HCM9 AC128714.1-201ENST00000637035 887 ntBASIC13.9□□□□□ -0.18
TRIM39Q9HCM9 GRK3-201ENST00000324198 9103 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
TRIM39Q9HCM9 FAM167A-AS1-203ENST00000624614 1357 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
TRIM39Q9HCM9 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
TRIM39Q9HCM9 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
TRIM39Q9HCM9 LRRC41-208ENST00000617760 2158 ntTSL 5 BASIC13.9□□□□□ -0.18
TRIM39Q9HCM9 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
TRIM39Q9HCM9 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC13.9□□□□□ -0.18
TRIM39Q9HCM9 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
TRIM39Q9HCM9 SLC46A3-201ENST00000266943 3173 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
TRIM39Q9HCM9 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
TRIM39Q9HCM9 MLX-202ENST00000346833 2334 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
TRIM39Q9HCM9 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
TRIM39Q9HCM9 SHMT2-203ENST00000449049 2121 ntTSL 2 BASIC13.9□□□□□ -0.18
TRIM39Q9HCM9 GOLGA8IP-202ENST00000611635 2100 ntBASIC13.9□□□□□ -0.18
TRIM39Q9HCM9 KCNIP1-210ENST00000636734 1613 ntTSL 5 BASIC13.9□□□□□ -0.19
TRIM39Q9HCM9 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
TRIM39Q9HCM9 KRT8P18-201ENST00000413425 1445 ntBASIC13.9□□□□□ -0.19
TRIM39Q9HCM9 NOTCH1-201ENST00000277541 9371 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 53.2 ms