Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 LINC02560-201ENST00000596379 459 ntBASIC13.63□□□□□ -0.23
CCDC28BQ9BUN5 AC009884.2-201ENST00000603110 324 ntBASIC13.63□□□□□ -0.23
CCDC28BQ9BUN5 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC28BQ9BUN5 Z98259.2-201ENST00000641583 609 ntBASIC13.63□□□□□ -0.23
CCDC28BQ9BUN5 MYO1G-201ENST00000258787 3267 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC28BQ9BUN5 GRIA4-210ENST00000527669 2647 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC28BQ9BUN5 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC13.63□□□□□ -0.23
CCDC28BQ9BUN5 FAM120C-202ENST00000375180 8057 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC28BQ9BUN5 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC28BQ9BUN5 KIF9-207ENST00000444589 2791 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC28BQ9BUN5 PPP1R8-203ENST00000373931 2651 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC28BQ9BUN5 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC13.63□□□□□ -0.23
CCDC28BQ9BUN5 ZNF384-201ENST00000319770 3266 ntTSL 2 BASIC13.63□□□□□ -0.23
CCDC28BQ9BUN5 SKP2-209ENST00000620197 3255 ntTSL 2 BASIC13.63□□□□□ -0.23
CCDC28BQ9BUN5 TMEM182-201ENST00000409173 3198 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC28BQ9BUN5 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC28BQ9BUN5 RBM4-201ENST00000310092 1694 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC28BQ9BUN5 AC021752.1-202ENST00000613161 2398 ntTSL 2 BASIC13.63□□□□□ -0.23
CCDC28BQ9BUN5 C6orf62-202ENST00000378119 4134 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC28BQ9BUN5 RHOH-217ENST00000610353 2268 ntAPPRIS P1 TSL 4 BASIC13.62□□□□□ -0.23
CCDC28BQ9BUN5 DDX50-201ENST00000373585 2538 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC28BQ9BUN5 POPDC2-208ENST00000493094 1837 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
CCDC28BQ9BUN5 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC28BQ9BUN5 METAP1-201ENST00000296411 2791 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC28BQ9BUN5 PLXNB2-201ENST00000359337 6335 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
CCDC28BQ9BUN5 ELAVL1-201ENST00000407627 6015 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC28BQ9BUN5 MGRN1-203ENST00000415496 6405 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC28BQ9BUN5 LINC01623-201ENST00000440244 2458 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC28BQ9BUN5 NFKBIZ-202ENST00000326172 3923 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC28BQ9BUN5 TESPA1-201ENST00000316577 1898 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC28BQ9BUN5 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC28BQ9BUN5 AC006001.1-201ENST00000325130 474 ntBASIC13.62□□□□□ -0.23
CCDC28BQ9BUN5 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
CCDC28BQ9BUN5 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
CCDC28BQ9BUN5 PIN1P1-201ENST00000412108 996 ntBASIC13.62□□□□□ -0.23
CCDC28BQ9BUN5 AC016694.1-201ENST00000434179 700 ntBASIC13.62□□□□□ -0.23
CCDC28BQ9BUN5 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC13.62□□□□□ -0.23
CCDC28BQ9BUN5 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC28BQ9BUN5 HIST2H2BB-201ENST00000449108 381 ntBASIC13.62□□□□□ -0.23
CCDC28BQ9BUN5 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC13.62□□□□□ -0.23
CCDC28BQ9BUN5 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
CCDC28BQ9BUN5 VWA5B2-201ENST00000273794 3486 ntTSL 2 BASIC13.62□□□□□ -0.23
CCDC28BQ9BUN5 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC13.62□□□□□ -0.23
CCDC28BQ9BUN5 CAND2-204ENST00000456430 4573 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC28BQ9BUN5 SH3TC1-201ENST00000245105 4226 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
CCDC28BQ9BUN5 HDAC8-207ENST00000373573 2014 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC28BQ9BUN5 KDM5C-208ENST00000452825 6096 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
CCDC28BQ9BUN5 PPP1R11-204ENST00000376769 1689 ntTSL 2 BASIC13.62□□□□□ -0.23
CCDC28BQ9BUN5 CPLX2-201ENST00000359546 5023 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC28BQ9BUN5 PTPRK-204ENST00000368210 5025 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
CCDC28BQ9BUN5 NDUFAF7-201ENST00000002125 2176 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC28BQ9BUN5 ASCC3-203ENST00000369143 3433 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC28BQ9BUN5 CCDC142-202ENST00000393965 3406 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC28BQ9BUN5 NLGN3-206ENST00000612180 3319 ntTSL 5 BASIC13.62□□□□□ -0.23
CCDC28BQ9BUN5 TMPRSS4-213ENST00000522824 2052 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC28BQ9BUN5 ALCAM-201ENST00000306107 4701 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC28BQ9BUN5 UBFD1-207ENST00000567212 4727 ntAPPRIS ALT2 TSL 2 BASIC13.62□□□□□ -0.23
CCDC28BQ9BUN5 DPP8-201ENST00000300141 3139 ntAPPRIS ALT1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC28BQ9BUN5 DCAF5-209ENST00000557386 2883 ntAPPRIS ALT1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC28BQ9BUN5 NEK3-205ENST00000610828 2396 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC28BQ9BUN5 MAT2B-204ENST00000518095 3409 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC28BQ9BUN5 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC28BQ9BUN5 GPR35-205ENST00000438013 3821 ntAPPRIS P3 BASIC13.61□□□□□ -0.23
CCDC28BQ9BUN5 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC28BQ9BUN5 PRPF40B-209ENST00000548825 3307 ntAPPRIS P2 TSL 5 BASIC13.61□□□□□ -0.23
CCDC28BQ9BUN5 MALL-201ENST00000272462 3061 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC28BQ9BUN5 PCDHB17P-202ENST00000623466 3066 ntBASIC13.61□□□□□ -0.23
CCDC28BQ9BUN5 NCLN-201ENST00000246117 4005 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC28BQ9BUN5 GFI1B-203ENST00000372123 1514 ntTSL 5 BASIC13.61□□□□□ -0.23
CCDC28BQ9BUN5 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC28BQ9BUN5 HSPA8P9-201ENST00000485881 1943 ntBASIC13.61□□□□□ -0.23
CCDC28BQ9BUN5 SLC6A9-205ENST00000372310 3130 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
CCDC28BQ9BUN5 TRPM5-201ENST00000155858 3929 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC28BQ9BUN5 UGT3A1-201ENST00000274278 5122 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC28BQ9BUN5 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC28BQ9BUN5 HDAC7-203ENST00000380610 3261 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
CCDC28BQ9BUN5 GPM6B-202ENST00000355135 1673 ntAPPRIS ALT1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC28BQ9BUN5 DDX19B-202ENST00000355992 1692 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC28BQ9BUN5 AC144522.1-201ENST00000625111 1658 ntBASIC13.61□□□□□ -0.23
CCDC28BQ9BUN5 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
CCDC28BQ9BUN5 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC28BQ9BUN5 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC13.61□□□□□ -0.23
CCDC28BQ9BUN5 AC034228.2-201ENST00000432558 459 ntTSL 3 BASIC13.61□□□□□ -0.23
CCDC28BQ9BUN5 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC13.61□□□□□ -0.23
CCDC28BQ9BUN5 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC13.61□□□□□ -0.23
CCDC28BQ9BUN5 FTH1P14-201ENST00000482930 551 ntBASIC13.61□□□□□ -0.23
CCDC28BQ9BUN5 NCK2-206ENST00000522586 490 ntTSL 5 BASIC13.61□□□□□ -0.23
CCDC28BQ9BUN5 SLC25A47P1-201ENST00000531577 414 ntBASIC13.61□□□□□ -0.23
CCDC28BQ9BUN5 AL136295.3-201ENST00000558325 850 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
CCDC28BQ9BUN5 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC13.61□□□□□ -0.23
CCDC28BQ9BUN5 NFATC2IP-206ENST00000568148 1157 ntTSL 2 BASIC13.61□□□□□ -0.23
CCDC28BQ9BUN5 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC13.61□□□□□ -0.23
CCDC28BQ9BUN5 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC13.61□□□□□ -0.23
CCDC28BQ9BUN5 AC023511.2-201ENST00000618803 211 ntBASIC13.61□□□□□ -0.23
CCDC28BQ9BUN5 AC133540.1-201ENST00000620845 1019 ntBASIC13.61□□□□□ -0.23
CCDC28BQ9BUN5 DPY19L2P2-205ENST00000439473 3994 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC28BQ9BUN5 MBP-205ENST00000397860 4844 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC28BQ9BUN5 CCDC138-203ENST00000412964 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC28BQ9BUN5 VILL-201ENST00000283713 2970 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC28BQ9BUN5 PHF21B-201ENST00000313237 3671 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms