Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
SOX2P48431 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
SOX2P48431 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC12.37□□□□□ -0.43
SOX2P48431 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC12.37□□□□□ -0.43
SOX2P48431 RPL28-206ENST00000558752 671 ntTSL 3 BASIC12.37□□□□□ -0.43
SOX2P48431 DUX4L46-201ENST00000566845 751 ntBASIC12.37□□□□□ -0.43
SOX2P48431 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC12.37□□□□□ -0.43
SOX2P48431 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC12.37□□□□□ -0.43
SOX2P48431 LINC02084-201ENST00000606069 1096 ntBASIC12.37□□□□□ -0.43
SOX2P48431 AC006538.3-201ENST00000612495 578 ntBASIC12.37□□□□□ -0.43
SOX2P48431 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC12.37□□□□□ -0.43
SOX2P48431 AL591163.1-201ENST00000641757 987 ntBASIC12.37□□□□□ -0.43
SOX2P48431 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC12.37□□□□□ -0.43
SOX2P48431 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC12.37□□□□□ -0.43
SOX2P48431 RPA2-203ENST00000373912 1752 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
SOX2P48431 IFT172-203ENST00000416524 1982 ntTSL 2 BASIC12.37□□□□□ -0.43
SOX2P48431 C7orf57-202ENST00000420324 1957 ntTSL 5 BASIC12.37□□□□□ -0.43
SOX2P48431 LDLRAD3-202ENST00000524419 1996 ntTSL 5 BASIC12.37□□□□□ -0.43
SOX2P48431 CABP4-201ENST00000325656 2559 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
SOX2P48431 HTR4-203ENST00000377888 2962 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
SOX2P48431 RNFT2-201ENST00000257575 3882 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
SOX2P48431 SLC4A1-201ENST00000262418 4965 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
SOX2P48431 NLRP2-202ENST00000339757 3422 ntAPPRIS ALT2 TSL 2 BASIC12.37□□□□□ -0.43
SOX2P48431 RIC8B-201ENST00000355478 3207 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
SOX2P48431 GPR107-208ENST00000610997 2813 ntTSL 5 BASIC12.37□□□□□ -0.43
SOX2P48431 DAXX-201ENST00000266000 2606 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
SOX2P48431 LRRC17-201ENST00000249377 2002 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
SOX2P48431 DAB1-207ENST00000420954 1817 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
SOX2P48431 AAMP-204ENST00000444053 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC12.37□□□□□ -0.43
SOX2P48431 AC010970.1-201ENST00000445125 1848 ntBASIC12.37□□□□□ -0.43
SOX2P48431 AC003986.1-201ENST00000452700 1526 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
SOX2P48431 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
SOX2P48431 PCNX4-202ENST00000391611 4073 ntTSL 2 BASIC12.37□□□□□ -0.43
SOX2P48431 LINC00115-201ENST00000473798 1317 ntBASIC12.37□□□□□ -0.43
SOX2P48431 SETD1B-204ENST00000619791 5901 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
SOX2P48431 COG1-201ENST00000299886 3079 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
SOX2P48431 INHBA-201ENST00000242208 6064 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
SOX2P48431 NAALADL1-201ENST00000340252 2376 ntTSL 5 BASIC12.36□□□□□ -0.43
SOX2P48431 B4GALT4-201ENST00000359213 2385 ntAPPRIS P1 TSL 2 BASIC12.36□□□□□ -0.43
SOX2P48431 GK-203ENST00000378943 3707 ntAPPRIS ALT1 TSL 1 (best) BASIC12.36□□□□□ -0.43
SOX2P48431 ALG11-204ENST00000616513 1983 ntTSL 2 BASIC12.36□□□□□ -0.43
SOX2P48431 AL117190.1-201ENST00000637474 1985 ntTSL 5 BASIC12.36□□□□□ -0.43
SOX2P48431 ZNF774-201ENST00000354377 3202 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
SOX2P48431 CCDC88C-201ENST00000331194 3104 ntTSL 5 BASIC12.36□□□□□ -0.43
SOX2P48431 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC12.36□□□□□ -0.43
SOX2P48431 CDK20-209ENST00000605159 1860 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
SOX2P48431 TCF3-202ENST00000344749 4289 ntTSL 5 BASIC12.36□□□□□ -0.43
SOX2P48431 SDR9C7-201ENST00000293502 1765 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
SOX2P48431 SYT4-205ENST00000590752 1765 ntTSL 2 BASIC12.36□□□□□ -0.43
SOX2P48431 ACVR1B-202ENST00000415850 1665 ntTSL 2 BASIC12.36□□□□□ -0.43
SOX2P48431 DTX1-201ENST00000257600 3455 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
SOX2P48431 ARHGEF2-206ENST00000462460 4438 ntTSL 5 BASIC12.36□□□□□ -0.43
SOX2P48431 WDR73-202ENST00000434634 5387 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
SOX2P48431 AC012435.1-201ENST00000563287 3385 ntTSL 2 BASIC12.36□□□□□ -0.43
SOX2P48431 ADRA2B-201ENST00000620793 3371 ntAPPRIS P1 BASIC12.36□□□□□ -0.43
SOX2P48431 AC090114.2-201ENST00000608477 7054 ntBASIC12.36□□□□□ -0.43
SOX2P48431 YWHAE-201ENST00000264335 2211 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
SOX2P48431 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
SOX2P48431 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
SOX2P48431 AC103592.1-201ENST00000394513 664 ntBASIC12.36□□□□□ -0.43
SOX2P48431 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
SOX2P48431 USB1-202ENST00000423271 1217 ntTSL 2 BASIC12.36□□□□□ -0.43
SOX2P48431 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC12.36□□□□□ -0.43
SOX2P48431 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC12.36□□□□□ -0.43
SOX2P48431 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC12.36□□□□□ -0.43
SOX2P48431 AC007551.1-201ENST00000457394 519 ntBASIC12.36□□□□□ -0.43
SOX2P48431 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC12.36□□□□□ -0.43
SOX2P48431 TERF1P3-201ENST00000505638 1227 ntBASIC12.36□□□□□ -0.43
SOX2P48431 USP32P1-208ENST00000506594 1164 ntBASIC12.36□□□□□ -0.43
SOX2P48431 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
SOX2P48431 AC022217.1-201ENST00000521069 738 ntBASIC12.36□□□□□ -0.43
SOX2P48431 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC12.36□□□□□ -0.43
SOX2P48431 KRT90P-201ENST00000549264 1064 ntBASIC12.36□□□□□ -0.43
SOX2P48431 MIR4745-201ENST00000577608 62 ntBASIC12.36□□□□□ -0.43
SOX2P48431 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC12.36□□□□□ -0.43
SOX2P48431 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC12.36□□□□□ -0.43
SOX2P48431 AC233724.13-201ENST00000598383 410 ntBASIC12.36□□□□□ -0.43
SOX2P48431 YTHDF3-AS1-201ENST00000603538 718 ntBASIC12.36□□□□□ -0.43
SOX2P48431 AL096865.1-201ENST00000606796 927 ntBASIC12.36□□□□□ -0.43
SOX2P48431 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC12.36□□□□□ -0.43
SOX2P48431 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC12.36□□□□□ -0.43
SOX2P48431 DNAJC14-202ENST00000317287 2774 ntAPPRIS P1 TSL 2 BASIC12.36□□□□□ -0.43
SOX2P48431 EIF3A-201ENST00000369144 6646 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
SOX2P48431 ATP6V0A1-206ENST00000585525 2679 ntTSL 2 BASIC12.36□□□□□ -0.43
SOX2P48431 BCRP2-203ENST00000461808 1832 ntTSL 2 BASIC12.36□□□□□ -0.43
SOX2P48431 RRBP1-201ENST00000246043 4737 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
SOX2P48431 CLTCL1-212ENST00000622493 1714 ntTSL 2 BASIC12.36□□□□□ -0.43
SOX2P48431 TCF3-220ENST00000611869 4409 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
SOX2P48431 SPOCK3-218ENST00000511531 2908 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
SOX2P48431 CARHSP1-220ENST00000619881 2849 ntAPPRIS P1 TSL 3 BASIC12.36□□□□□ -0.43
SOX2P48431 DNMT3B-203ENST00000348286 4048 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
SOX2P48431 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
SOX2P48431 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC12.36□□□□□ -0.43
SOX2P48431 MAP7-205ENST00000544465 2744 ntAPPRIS ALT2 TSL 2 BASIC12.36□□□□□ -0.43
SOX2P48431 SYBU-217ENST00000528331 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
SOX2P48431 FAM71E2-201ENST00000424985 3191 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
SOX2P48431 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
SOX2P48431 TMBIM1-202ENST00000396809 2422 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
SOX2P48431 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC12.36□□□□□ -0.43
SOX2P48431 GLIS3-202ENST00000381971 3961 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 62.7 ms