Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC13.23□□□□□ -0.29
SOX3P41225 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
SOX3P41225 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SOX3P41225 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC13.23□□□□□ -0.29
SOX3P41225 S100PBP-203ENST00000373476 3320 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
SOX3P41225 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
SOX3P41225 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
SOX3P41225 KRT8P19-201ENST00000551916 1455 ntBASIC13.23□□□□□ -0.29
SOX3P41225 MAGED4B-201ENST00000335504 2578 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
SOX3P41225 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC13.23□□□□□ -0.29
SOX3P41225 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
SOX3P41225 TBC1D3J-201ENST00000620719 1426 ntBASIC13.22□□□□□ -0.29
SOX3P41225 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC13.22□□□□□ -0.29
SOX3P41225 STK3-218ENST00000617590 2485 ntTSL 5 BASIC13.22□□□□□ -0.29
SOX3P41225 TCHH-202ENST00000614923 6995 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
SOX3P41225 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SOX3P41225 HPD-204ENST00000543163 1709 ntTSL 5 BASIC13.22□□□□□ -0.29
SOX3P41225 TRIM4-203ENST00000355947 3383 ntAPPRIS P4 TSL 1 (best) BASIC13.22□□□□□ -0.29
SOX3P41225 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
SOX3P41225 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
SOX3P41225 IKBKG-208ENST00000611176 1654 ntTSL 2 BASIC13.22□□□□□ -0.29
SOX3P41225 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC13.22□□□□□ -0.29
SOX3P41225 OTP-201ENST00000306422 3669 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SOX3P41225 GTF2IRD2B-203ENST00000472837 3560 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SOX3P41225 OCRL-202ENST00000371113 5162 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SOX3P41225 IFT57-201ENST00000264538 3203 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SOX3P41225 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
SOX3P41225 AC239798.2-201ENST00000415338 3540 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
SOX3P41225 MKL1-201ENST00000355630 4496 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
SOX3P41225 PDE2A-203ENST00000418754 2855 ntTSL 2 BASIC13.22□□□□□ -0.29
SOX3P41225 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SOX3P41225 MORC4-202ENST00000355610 3834 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
SOX3P41225 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC13.22□□□□□ -0.29
SOX3P41225 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC13.22□□□□□ -0.29
SOX3P41225 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC13.22□□□□□ -0.29
SOX3P41225 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC13.22□□□□□ -0.29
SOX3P41225 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC13.22□□□□□ -0.29
SOX3P41225 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC13.22□□□□□ -0.29
SOX3P41225 DUX4L50-201ENST00000455245 715 ntBASIC13.22□□□□□ -0.29
SOX3P41225 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC13.22□□□□□ -0.29
SOX3P41225 STUB1-204ENST00000564370 875 ntTSL 2 BASIC13.22□□□□□ -0.29
SOX3P41225 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
SOX3P41225 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC13.22□□□□□ -0.29
SOX3P41225 AL133499.1-201ENST00000596207 608 ntBASIC13.22□□□□□ -0.29
SOX3P41225 HPN-206ENST00000597419 1212 ntTSL 5 BASIC13.22□□□□□ -0.29
SOX3P41225 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC13.22□□□□□ -0.29
SOX3P41225 AC007663.2-201ENST00000506039 2228 ntTSL 2 BASIC13.22□□□□□ -0.29
SOX3P41225 STRC-205ENST00000450892 5680 ntAPPRIS P2 TSL 5 BASIC13.22□□□□□ -0.29
SOX3P41225 TMEM87A-201ENST00000307216 1598 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
SOX3P41225 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC13.22□□□□□ -0.29
SOX3P41225 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SOX3P41225 MOGAT3-201ENST00000223114 2132 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
SOX3P41225 RIN3-212ENST00000620541 3617 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
SOX3P41225 GALC-201ENST00000261304 3883 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SOX3P41225 GTF2IRD2-201ENST00000451013 3558 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SOX3P41225 CBLB-204ENST00000405772 3237 ntTSL 2 BASIC13.22□□□□□ -0.29
SOX3P41225 SNPH-201ENST00000381867 5533 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
SOX3P41225 CRYBG2-201ENST00000308182 5245 ntAPPRIS P5 TSL 5 BASIC13.22□□□□□ -0.29
SOX3P41225 ZNF541-202ENST00000314121 4631 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
SOX3P41225 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC13.22□□□□□ -0.29
SOX3P41225 WARS2-201ENST00000235521 2800 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
SOX3P41225 RIC1-203ENST00000414202 6774 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
SOX3P41225 FUT1-201ENST00000310160 4246 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
SOX3P41225 SLC8A2-203ENST00000542837 3603 ntTSL 2 BASIC13.21□□□□□ -0.29
SOX3P41225 NOL9-201ENST00000377705 6649 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
SOX3P41225 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC13.21□□□□□ -0.29
SOX3P41225 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
SOX3P41225 STAM2-201ENST00000263904 5701 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
SOX3P41225 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
SOX3P41225 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
SOX3P41225 WNK1-201ENST00000315939 10452 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
SOX3P41225 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
SOX3P41225 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
SOX3P41225 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC13.21□□□□□ -0.29
SOX3P41225 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
SOX3P41225 LRSAM1-201ENST00000300417 3146 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
SOX3P41225 GLB1L-202ENST00000392089 2574 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
SOX3P41225 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC13.21□□□□□ -0.29
SOX3P41225 ENO2-205ENST00000535366 2827 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
SOX3P41225 CAMKV-209ENST00000477224 3314 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
SOX3P41225 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC13.21□□□□□ -0.29
SOX3P41225 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
SOX3P41225 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
SOX3P41225 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
SOX3P41225 OR2K2-202ENST00000374428 1038 ntBASIC13.21□□□□□ -0.29
SOX3P41225 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC13.21□□□□□ -0.29
SOX3P41225 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC13.21□□□□□ -0.29
SOX3P41225 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
SOX3P41225 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
SOX3P41225 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
SOX3P41225 RPS9P1-201ENST00000419943 583 ntBASIC13.21□□□□□ -0.29
SOX3P41225 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC13.21□□□□□ -0.29
SOX3P41225 AC026320.2-201ENST00000434379 478 ntBASIC13.21□□□□□ -0.29
SOX3P41225 AC234782.1-201ENST00000451950 919 ntBASIC13.21□□□□□ -0.29
SOX3P41225 RN7SL258P-201ENST00000478664 300 ntBASIC13.21□□□□□ -0.29
SOX3P41225 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC13.21□□□□□ -0.29
SOX3P41225 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC13.21□□□□□ -0.29
SOX3P41225 RNA5SP423-201ENST00000517127 109 ntBASIC13.21□□□□□ -0.29
SOX3P41225 IGLV3-15-201ENST00000518356 244 ntBASIC13.21□□□□□ -0.29
SOX3P41225 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 58.7 ms