Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
CXCL1P09341 ARMC1-202ENST00000458464 2849 ntTSL 2 BASIC10.85□□□□□ -0.67
CXCL1P09341 TUBB4AP1-201ENST00000450755 1325 ntBASIC10.85□□□□□ -0.67
CXCL1P09341 GK-205ENST00000378946 3638 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
CXCL1P09341 SULF1-202ENST00000402687 4891 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
CXCL1P09341 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC10.85□□□□□ -0.67
CXCL1P09341 PRR3-201ENST00000376557 1797 ntTSL 2 BASIC10.85□□□□□ -0.67
CXCL1P09341 TMEM9B-202ENST00000525069 1433 ntTSL 2 BASIC10.85□□□□□ -0.67
CXCL1P09341 XAB2-201ENST00000358368 2667 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
CXCL1P09341 MINK1-203ENST00000453408 3939 ntAPPRIS ALT2 TSL 1 (best) BASIC10.85□□□□□ -0.67
CXCL1P09341 LPXN-203ENST00000528954 1879 ntAPPRIS ALT2 TSL 2 BASIC10.85□□□□□ -0.67
CXCL1P09341 DIO1-216ENST00000613679 1856 ntAPPRIS ALT1 TSL 5 BASIC10.85□□□□□ -0.67
CXCL1P09341 UGT1A5-201ENST00000373414 2345 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
CXCL1P09341 KRT17P7-202ENST00000582261 2334 ntTSL 5 BASIC10.85□□□□□ -0.67
CXCL1P09341 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
CXCL1P09341 SAMD4A-201ENST00000251091 6565 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
CXCL1P09341 USP39-207ENST00000450066 2086 ntTSL 2 BASIC10.85□□□□□ -0.67
CXCL1P09341 KCNH6-201ENST00000314672 3062 ntAPPRIS ALT2 TSL 2 BASIC10.85□□□□□ -0.67
CXCL1P09341 SLC4A1-201ENST00000262418 4965 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
CXCL1P09341 TRIM37-203ENST00000393066 3622 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
CXCL1P09341 SEPT9-204ENST00000427180 3635 ntTSL 2 BASIC10.85□□□□□ -0.67
CXCL1P09341 AL355388.2-201ENST00000610146 2157 ntTSL 4 BASIC10.85□□□□□ -0.67
CXCL1P09341 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
CXCL1P09341 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC10.85□□□□□ -0.67
CXCL1P09341 PTK7-204ENST00000349241 3801 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
CXCL1P09341 BAD-202ENST00000394531 631 ntTSL 3 BASIC10.85□□□□□ -0.67
CXCL1P09341 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC10.85□□□□□ -0.67
CXCL1P09341 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
CXCL1P09341 VDAC1P7-201ENST00000462417 847 ntBASIC10.85□□□□□ -0.67
CXCL1P09341 AC125807.1-201ENST00000483097 614 ntBASIC10.85□□□□□ -0.67
CXCL1P09341 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
CXCL1P09341 AC027369.6-201ENST00000525520 931 ntBASIC10.85□□□□□ -0.67
CXCL1P09341 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC10.85□□□□□ -0.67
CXCL1P09341 BAD-207ENST00000544785 525 ntTSL 3 BASIC10.85□□□□□ -0.67
CXCL1P09341 VPS29-207ENST00000549970 818 ntTSL 3 BASIC10.85□□□□□ -0.67
CXCL1P09341 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC10.85□□□□□ -0.67
CXCL1P09341 RRP7BP-205ENST00000566851 833 ntBASIC10.85□□□□□ -0.67
CXCL1P09341 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC10.85□□□□□ -0.67
CXCL1P09341 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC10.85□□□□□ -0.67
CXCL1P09341 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC10.85□□□□□ -0.67
CXCL1P09341 AP001002.3-201ENST00000623482 206 ntBASIC10.85□□□□□ -0.67
CXCL1P09341 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC10.85□□□□□ -0.67
CXCL1P09341 ZNF630-206ENST00000442455 2829 ntAPPRIS P2 TSL 4 BASIC10.85□□□□□ -0.67
CXCL1P09341 CLASP2-218ENST00000487200 1940 ntTSL 2 BASIC10.85□□□□□ -0.67
CXCL1P09341 SMARCA2-254ENST00000636903 2471 ntTSL 5 BASIC10.85□□□□□ -0.67
CXCL1P09341 LINC02228-202ENST00000641261 2489 ntBASIC10.85□□□□□ -0.67
CXCL1P09341 NCDN-203ENST00000373253 3677 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
CXCL1P09341 CHMP2B-201ENST00000263780 2557 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
CXCL1P09341 KRT17P4-205ENST00000579946 2555 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
CXCL1P09341 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC10.85□□□□□ -0.67
CXCL1P09341 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC10.85□□□□□ -0.67
CXCL1P09341 KCNMA1-265ENST00000639591 3888 ntAPPRIS ALT2 TSL 5 BASIC10.85□□□□□ -0.67
CXCL1P09341 PTPRVP-205ENST00000641549 5067 ntBASIC10.85□□□□□ -0.67
CXCL1P09341 DGKZP1-201ENST00000378718 2776 ntBASIC10.85□□□□□ -0.67
CXCL1P09341 ATIC-201ENST00000236959 2213 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
CXCL1P09341 FLCN-201ENST00000285071 3638 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
CXCL1P09341 Z97192.3-201ENST00000420902 2975 ntTSL 2 BASIC10.85□□□□□ -0.67
CXCL1P09341 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
CXCL1P09341 ARHGAP36-202ENST00000370921 2447 ntTSL 2 BASIC10.85□□□□□ -0.67
CXCL1P09341 TMCO4-202ENST00000375127 2403 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
CXCL1P09341 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
CXCL1P09341 MICAL2-201ENST00000256194 3906 ntAPPRIS P3 TSL 1 (best) BASIC10.85□□□□□ -0.67
CXCL1P09341 RIPK4-202ENST00000352483 4016 ntTSL 5 BASIC10.85□□□□□ -0.67
CXCL1P09341 SARS-201ENST00000234677 1852 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
CXCL1P09341 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC10.85□□□□□ -0.67
CXCL1P09341 AC139712.1-201ENST00000378256 1875 ntBASIC10.85□□□□□ -0.67
CXCL1P09341 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
CXCL1P09341 CYP11B1-204ENST00000517471 1874 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
CXCL1P09341 FAM198B-201ENST00000296530 4985 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
CXCL1P09341 PSMD12-201ENST00000356126 4406 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
CXCL1P09341 SMG7-214ENST00000508461 3985 ntAPPRIS ALT2 TSL 2 BASIC10.84□□□□□ -0.67
CXCL1P09341 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
CXCL1P09341 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
CXCL1P09341 LMBRD2-201ENST00000296603 8185 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
CXCL1P09341 NFXL1-202ENST00000381538 3728 ntAPPRIS P1 TSL 2 BASIC10.84□□□□□ -0.67
CXCL1P09341 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
CXCL1P09341 NIPSNAP3A-201ENST00000374767 1633 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
CXCL1P09341 SEC24B-201ENST00000265175 5083 ntAPPRIS ALT2 TSL 1 (best) BASIC10.84□□□□□ -0.67
CXCL1P09341 MVP-201ENST00000357402 2870 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
CXCL1P09341 THUMPD3-206ENST00000452837 2877 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
CXCL1P09341 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
CXCL1P09341 C1QTNF9B-202ENST00000382140 1825 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
CXCL1P09341 DNAJC11-202ENST00000377577 3311 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
CXCL1P09341 XYLT2-201ENST00000017003 3507 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
CXCL1P09341 POLA2-201ENST00000265465 3744 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
CXCL1P09341 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
CXCL1P09341 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
CXCL1P09341 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
CXCL1P09341 APOD-201ENST00000343267 1130 ntAPPRIS P2 TSL 1 (best) BASIC10.84□□□□□ -0.67
CXCL1P09341 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
CXCL1P09341 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC10.84□□□□□ -0.67
CXCL1P09341 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC10.84□□□□□ -0.67
CXCL1P09341 SSR4P1-201ENST00000415143 412 ntBASIC10.84□□□□□ -0.67
CXCL1P09341 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC10.84□□□□□ -0.67
CXCL1P09341 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC10.84□□□□□ -0.67
CXCL1P09341 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC10.84□□□□□ -0.67
CXCL1P09341 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC10.84□□□□□ -0.67
CXCL1P09341 ALG3P1-201ENST00000508806 1114 ntBASIC10.84□□□□□ -0.67
CXCL1P09341 FTH1-202ENST00000526640 786 ntTSL 2 BASIC10.84□□□□□ -0.67
CXCL1P09341 DAD1-205ENST00000543337 501 ntTSL 3 BASIC10.84□□□□□ -0.67
Retrieved 100 of 98,524 protein–RNA pairs in 87.5 ms