Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 LPCAT1-201ENST00000283415 3966 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 LIX1L-201ENST00000604000 3975 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 ST3GAL2-202ENST00000393640 8872 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 UBN1-202ENST00000396658 6336 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 KIF21B-204ENST00000461742 5428 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 LINC01725-203ENST00000417975 3177 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 AC015909.5-201ENST00000624336 2266 ntBASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 PSEN2-202ENST00000366783 2306 ntAPPRIS P3 TSL 5 BASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 USP38-201ENST00000307017 7009 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 GRHL1-202ENST00000405379 1881 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 BIVM-ERCC5-205ENST00000639435 5632 ntAPPRIS P5 TSL 5 BASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 PRR34-201ENST00000396008 2817 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 ZBTB20-215ENST00000481632 2800 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 RTL10-201ENST00000328554 6619 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 AC011298.1-201ENST00000407635 3398 ntTSL 2 BASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 CREBZF-204ENST00000527447 4037 ntAPPRIS P1 BASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC11.76□□□□□ -0.53
PDLIM3Q53GG5 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 TRPM4-201ENST00000252826 4109 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 KIFC3-202ENST00000421376 3128 ntTSL 2 BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 HPS1-215ENST00000613394 3714 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 DDX54-201ENST00000306014 4377 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 TGFBRAP1-201ENST00000258449 2827 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 NOB1-201ENST00000268802 1734 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 LDB3-209ENST00000623056 2314 ntTSL 5 BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 USE1-206ENST00000595101 1776 ntTSL 2 BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 FAM90A12P-201ENST00000519497 2375 ntBASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 FAM90A24P-201ENST00000520792 2369 ntBASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 KCNAB2-219ENST00000602612 2396 ntTSL 2 BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 LINC01114-203ENST00000425879 2434 ntTSL 2 BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 HELLS-202ENST00000348459 3099 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 TMPRSS6-203ENST00000406725 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 PIGF-202ENST00000306465 1061 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 IGHV3-49-201ENST00000390625 439 ntAPPRIS P1 BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 IDS-203ENST00000428056 1213 ntTSL 2 BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 FAU-202ENST00000434372 533 ntTSL 2 BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 PUDPP3-201ENST00000445368 636 ntBASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 RBM4B-202ENST00000524637 867 ntTSL 5 BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 SDHD-202ENST00000525291 790 ntTSL 3 BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 NPM1P43-201ENST00000558669 786 ntBASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 AC009119.2-201ENST00000561562 723 ntAPPRIS P1 TSL 2 BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 AC025279.2-201ENST00000569730 653 ntBASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 KRT18P8-201ENST00000581937 1246 ntBASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 CYGB-203ENST00000589145 788 ntTSL 3 BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 AP001065.2-201ENST00000617205 644 ntBASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 CR382287.2-201ENST00000623370 1942 ntTSL 2 BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 ZNF609-202ENST00000416172 3863 ntTSL 2 BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 TNRC6C-205ENST00000588061 8419 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 SYNM-203ENST00000560674 5908 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 COASY-211ENST00000590958 1976 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 INCENP-202ENST00000394818 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 AC051649.2-201ENST00000640310 3319 ntAPPRIS P1 BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 ATRIP-204ENST00000412052 2721 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 ITGB2-208ENST00000397857 2813 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 ARHGEF9-230ENST00000637178 2145 ntTSL 5 BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 GPR68-204ENST00000535815 2859 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 ARHGEF33-201ENST00000398800 4300 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 ACKR3-201ENST00000272928 2203 ntAPPRIS P1 TSL 2 BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 CATSPERE-201ENST00000366531 3038 ntAPPRIS ALT2 TSL 2 BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 DNM2-204ENST00000408974 3013 ntAPPRIS ALT1 TSL 2 BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 SPTB-202ENST00000389720 6321 ntTSL 5 BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 AC027612.1-201ENST00000445234 2395 ntBASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 FAM225A-202ENST00000453010 5625 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 AGBL3-202ENST00000435976 2495 ntTSL 5 BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 AC111170.3-201ENST00000624282 2464 ntBASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 PVR-205ENST00000425690 3325 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
PDLIM3Q53GG5 SIGLEC6-201ENST00000343300 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 KCNS2-202ENST00000521839 4340 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms