Protein–RNA interactions for Protein: Q2M329

CCDC96, Coiled-coil domain-containing protein 96, humanhuman

Predictions only

Length 555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC96Q2M329 AC092573.1-201ENST00000433054 884 ntBASIC16.31■□□□□ 0.2
CCDC96Q2M329 AC004837.1-201ENST00000446267 564 ntBASIC16.31■□□□□ 0.2
CCDC96Q2M329 CSAG1-204ENST00000452779 627 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC96Q2M329 RN7SL767P-201ENST00000493013 295 ntBASIC16.31■□□□□ 0.2
CCDC96Q2M329 SEC61B-203ENST00000498603 587 ntTSL 3 BASIC16.31■□□□□ 0.2
CCDC96Q2M329 SNCB-203ENST00000506696 552 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
CCDC96Q2M329 AC108474.1-201ENST00000507776 421 ntTSL 3 BASIC16.31■□□□□ 0.2
CCDC96Q2M329 RNA5SP406-201ENST00000516106 112 ntBASIC16.31■□□□□ 0.2
CCDC96Q2M329 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC96Q2M329 AC068867.1-201ENST00000559855 150 ntBASIC16.31■□□□□ 0.2
CCDC96Q2M329 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC16.31■□□□□ 0.2
CCDC96Q2M329 AC132825.4-202ENST00000578792 434 ntBASIC16.31■□□□□ 0.2
CCDC96Q2M329 AC007250.1-201ENST00000608934 338 ntBASIC16.31■□□□□ 0.2
CCDC96Q2M329 MIR6858-201ENST00000620733 67 ntBASIC16.31■□□□□ 0.2
CCDC96Q2M329 RPS10-207ENST00000621356 784 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
CCDC96Q2M329 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC96Q2M329 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC96Q2M329 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC96Q2M329 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
CCDC96Q2M329 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC16.31■□□□□ 0.2
CCDC96Q2M329 AC138969.2-201ENST00000532739 9932 ntBASIC16.31■□□□□ 0.2
CCDC96Q2M329 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC16.31■□□□□ 0.2
CCDC96Q2M329 NUP133-201ENST00000261396 5207 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC96Q2M329 RPP30-202ENST00000371703 2589 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC96Q2M329 IL9RP3-201ENST00000442856 1674 ntBASIC16.3■□□□□ 0.2
CCDC96Q2M329 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC16.3■□□□□ 0.2
CCDC96Q2M329 SLC6A5-202ENST00000525748 7084 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC96Q2M329 GPSM2-202ENST00000406462 7433 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
CCDC96Q2M329 RCC2P1-201ENST00000452257 1476 ntBASIC16.3■□□□□ 0.2
CCDC96Q2M329 SLC47A1-206ENST00000571335 1415 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC96Q2M329 KCTD1-207ENST00000580059 1425 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
CCDC96Q2M329 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC96Q2M329 C9orf3-202ENST00000297979 2820 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC96Q2M329 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC96Q2M329 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC96Q2M329 FAM167A-AS1-203ENST00000624614 1357 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC96Q2M329 RHOG-201ENST00000351018 1319 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC96Q2M329 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC96Q2M329 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC96Q2M329 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC16.3■□□□□ 0.2
CCDC96Q2M329 C7orf61-201ENST00000332375 1004 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC96Q2M329 CSAG1-203ENST00000370291 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC96Q2M329 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC96Q2M329 SPIN2B-203ENST00000374910 725 ntTSL 3 BASIC16.3■□□□□ 0.2
CCDC96Q2M329 AL935212.1-201ENST00000377548 906 ntTSL 5 BASIC16.3■□□□□ 0.2
CCDC96Q2M329 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC16.3■□□□□ 0.2
CCDC96Q2M329 RPL3P2-204ENST00000413027 1203 ntBASIC16.3■□□□□ 0.2
CCDC96Q2M329 AC012442.2-201ENST00000414784 425 ntTSL 2 BASIC16.3■□□□□ 0.2
CCDC96Q2M329 AL663074.1-201ENST00000436642 299 ntTSL 3 BASIC16.3■□□□□ 0.2
CCDC96Q2M329 GS1-124K5.4-201ENST00000445681 540 ntTSL 2 BASIC16.3■□□□□ 0.2
CCDC96Q2M329 RPS23-204ENST00000507980 836 ntTSL 2 BASIC16.3■□□□□ 0.2
CCDC96Q2M329 HINT1-205ENST00000508488 703 ntTSL 2 BASIC16.3■□□□□ 0.2
CCDC96Q2M329 PRR7-AS1-204ENST00000514846 543 ntTSL 2 BASIC16.3■□□□□ 0.2
CCDC96Q2M329 PLIN5-202ENST00000586133 907 ntTSL 3 BASIC16.3■□□□□ 0.2
CCDC96Q2M329 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
CCDC96Q2M329 AL359091.4-201ENST00000610052 409 ntBASIC16.3■□□□□ 0.2
CCDC96Q2M329 AP001065.2-201ENST00000617205 644 ntBASIC16.3■□□□□ 0.2
CCDC96Q2M329 SLC46A3-201ENST00000266943 3173 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC96Q2M329 CDK11B-203ENST00000341832 2998 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC96Q2M329 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC96Q2M329 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC96Q2M329 PEG13-201ENST00000631594 5667 ntBASIC16.3■□□□□ 0.2
CCDC96Q2M329 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
CCDC96Q2M329 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC96Q2M329 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC96Q2M329 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC16.3■□□□□ 0.2
CCDC96Q2M329 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC96Q2M329 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC16.3■□□□□ 0.2
CCDC96Q2M329 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC96Q2M329 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC96Q2M329 DCAF13-209ENST00000616836 2639 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC96Q2M329 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC96Q2M329 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC96Q2M329 SIRPA-202ENST00000358771 3996 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC96Q2M329 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC96Q2M329 SALL2-205ENST00000611430 1466 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC96Q2M329 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
CCDC96Q2M329 ATN1-201ENST00000356654 4351 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC96Q2M329 BEND3P1-201ENST00000421591 1944 ntBASIC16.29■□□□□ 0.2
CCDC96Q2M329 BORCS8-202ENST00000462790 1429 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC96Q2M329 ZNF75A-205ENST00000574298 2347 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
CCDC96Q2M329 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC96Q2M329 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
CCDC96Q2M329 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
CCDC96Q2M329 SPACA3-201ENST00000269053 817 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC96Q2M329 MED11-201ENST00000293777 833 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC96Q2M329 TPM3-211ENST00000368531 1115 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC96Q2M329 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC16.29■□□□□ 0.2
CCDC96Q2M329 ZFAND2B-205ENST00000409319 771 ntTSL 2 BASIC16.29■□□□□ 0.2
CCDC96Q2M329 HORMAD2-AS1-202ENST00000432568 727 ntTSL 3 BASIC16.29■□□□□ 0.2
CCDC96Q2M329 AC092638.2-201ENST00000441105 947 ntBASIC16.29■□□□□ 0.2
CCDC96Q2M329 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC96Q2M329 AL713999.1-201ENST00000473363 753 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
CCDC96Q2M329 RN7SKP155-201ENST00000516031 288 ntBASIC16.29■□□□□ 0.2
CCDC96Q2M329 AC246817.2-203ENST00000517357 569 ntTSL 4 BASIC16.29■□□□□ 0.2
CCDC96Q2M329 AC246817.2-202ENST00000519393 564 ntTSL 4 BASIC16.29■□□□□ 0.2
CCDC96Q2M329 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC96Q2M329 AC140113.1-201ENST00000603467 169 ntBASIC16.29■□□□□ 0.2
CCDC96Q2M329 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC96Q2M329 ABCA17P-202ENST00000469908 4188 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 58.2 ms