Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 AL139158.3-201ENST00000641212 1562 ntBASIC13.66□□□□□ -0.22
CCDC28BQ9BUN5 ACO1-203ENST00000541043 3618 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
CCDC28BQ9BUN5 ANKRD20A1-201ENST00000562196 3379 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28BQ9BUN5 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28BQ9BUN5 ZDHHC15-201ENST00000373367 5796 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28BQ9BUN5 DCUN1D4-201ENST00000334635 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28BQ9BUN5 RAB18-208ENST00000611151 4931 ntTSL 5 BASIC13.66□□□□□ -0.22
CCDC28BQ9BUN5 ELP2-221ENST00000542824 2288 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28BQ9BUN5 TP53INP1-202ENST00000448464 5631 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28BQ9BUN5 LYRM9-202ENST00000379103 1685 ntAPPRIS P1 TSL 3 BASIC13.66□□□□□ -0.22
CCDC28BQ9BUN5 SLC26A6-207ENST00000420764 2630 ntAPPRIS ALT1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28BQ9BUN5 FAM76A-204ENST00000373954 3567 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28BQ9BUN5 RSPO2-202ENST00000517781 2748 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28BQ9BUN5 TRMT1L-201ENST00000367506 4392 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28BQ9BUN5 LINC01114-202ENST00000424321 2112 ntTSL 2 BASIC13.66□□□□□ -0.22
CCDC28BQ9BUN5 KLHL9-201ENST00000359039 5710 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
CCDC28BQ9BUN5 FLJ30679-201ENST00000624773 1980 ntBASIC13.66□□□□□ -0.22
CCDC28BQ9BUN5 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28BQ9BUN5 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28BQ9BUN5 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
CCDC28BQ9BUN5 CHCHD1-202ENST00000372837 1202 ntTSL 2 BASIC13.66□□□□□ -0.22
CCDC28BQ9BUN5 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC13.66□□□□□ -0.22
CCDC28BQ9BUN5 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28BQ9BUN5 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
CCDC28BQ9BUN5 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC13.66□□□□□ -0.22
CCDC28BQ9BUN5 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28BQ9BUN5 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC13.66□□□□□ -0.22
CCDC28BQ9BUN5 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC13.66□□□□□ -0.22
CCDC28BQ9BUN5 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC13.66□□□□□ -0.22
CCDC28BQ9BUN5 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC13.66□□□□□ -0.22
CCDC28BQ9BUN5 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28BQ9BUN5 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28BQ9BUN5 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC13.66□□□□□ -0.22
CCDC28BQ9BUN5 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28BQ9BUN5 AC078819.1-201ENST00000547454 765 ntBASIC13.66□□□□□ -0.22
CCDC28BQ9BUN5 AC012085.1-201ENST00000548270 765 ntBASIC13.66□□□□□ -0.22
CCDC28BQ9BUN5 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28BQ9BUN5 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
CCDC28BQ9BUN5 RPL28-206ENST00000558752 671 ntTSL 3 BASIC13.66□□□□□ -0.22
CCDC28BQ9BUN5 C2orf69P2-201ENST00000562032 1123 ntBASIC13.66□□□□□ -0.22
CCDC28BQ9BUN5 PPY2P-201ENST00000582808 702 ntBASIC13.66□□□□□ -0.22
CCDC28BQ9BUN5 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28BQ9BUN5 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC13.66□□□□□ -0.22
CCDC28BQ9BUN5 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC13.66□□□□□ -0.22
CCDC28BQ9BUN5 PBXIP1-203ENST00000368465 3144 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
CCDC28BQ9BUN5 CEMIP-202ENST00000356249 7297 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28BQ9BUN5 RASA4-203ENST00000461209 3244 ntTSL 2 BASIC13.66□□□□□ -0.22
CCDC28BQ9BUN5 FAM212B-201ENST00000357260 5980 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28BQ9BUN5 ITGA3-201ENST00000007722 3665 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
CCDC28BQ9BUN5 ZNF573-204ENST00000392138 2266 ntTSL 2 BASIC13.66□□□□□ -0.22
CCDC28BQ9BUN5 RIN3-212ENST00000620541 3617 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
CCDC28BQ9BUN5 NRP1-202ENST00000374816 2804 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28BQ9BUN5 CTTN-201ENST00000301843 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28BQ9BUN5 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28BQ9BUN5 AC244394.1-201ENST00000435000 1665 ntBASIC13.66□□□□□ -0.22
CCDC28BQ9BUN5 ZNF774-201ENST00000354377 3202 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28BQ9BUN5 ALX4-201ENST00000329255 5750 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28BQ9BUN5 BX255923.2-202ENST00000620833 2874 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CCDC28BQ9BUN5 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC13.65□□□□□ -0.22
CCDC28BQ9BUN5 DSTN-203ENST00000474024 1853 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CCDC28BQ9BUN5 SMG6-203ENST00000536871 1865 ntTSL 2 BASIC13.65□□□□□ -0.22
CCDC28BQ9BUN5 ADAM8-201ENST00000415217 3077 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
CCDC28BQ9BUN5 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
CCDC28BQ9BUN5 AC027369.3-201ENST00000530465 3707 ntBASIC13.65□□□□□ -0.22
CCDC28BQ9BUN5 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC13.65□□□□□ -0.22
CCDC28BQ9BUN5 LIMS1-205ENST00000410093 1526 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CCDC28BQ9BUN5 ZNF275-201ENST00000370249 5920 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CCDC28BQ9BUN5 OCRL-201ENST00000357121 5138 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CCDC28BQ9BUN5 GSE1-203ENST00000405402 4366 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
CCDC28BQ9BUN5 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CCDC28BQ9BUN5 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CCDC28BQ9BUN5 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CCDC28BQ9BUN5 DYNC1I1-201ENST00000324972 2950 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
CCDC28BQ9BUN5 SKA1-202ENST00000398452 979 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CCDC28BQ9BUN5 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC13.65□□□□□ -0.22
CCDC28BQ9BUN5 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC13.65□□□□□ -0.22
CCDC28BQ9BUN5 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC13.65□□□□□ -0.22
CCDC28BQ9BUN5 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC13.65□□□□□ -0.22
CCDC28BQ9BUN5 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC13.65□□□□□ -0.22
CCDC28BQ9BUN5 NAA38-206ENST00000576384 424 ntTSL 2 BASIC13.65□□□□□ -0.22
CCDC28BQ9BUN5 SLC25A35-203ENST00000579192 2136 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CCDC28BQ9BUN5 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC13.65□□□□□ -0.22
CCDC28BQ9BUN5 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
CCDC28BQ9BUN5 AC138951.2-201ENST00000623455 1161 ntBASIC13.65□□□□□ -0.22
CCDC28BQ9BUN5 UNK-205ENST00000589666 3925 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CCDC28BQ9BUN5 TRAPPC10-201ENST00000291574 6976 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CCDC28BQ9BUN5 TBC1D24-201ENST00000293970 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CCDC28BQ9BUN5 AC022364.1-202ENST00000617468 2409 ntBASIC13.65□□□□□ -0.22
CCDC28BQ9BUN5 TRPM5-203ENST00000533060 3562 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
CCDC28BQ9BUN5 SLC13A2-201ENST00000314669 2711 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CCDC28BQ9BUN5 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC13.65□□□□□ -0.22
CCDC28BQ9BUN5 PWWP2A-202ENST00000456329 3991 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CCDC28BQ9BUN5 ACSM2B-201ENST00000329697 2935 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CCDC28BQ9BUN5 PLEKHG3-203ENST00000471182 3106 ntTSL 5 BASIC13.65□□□□□ -0.22
CCDC28BQ9BUN5 SLC5A11-203ENST00000449109 2069 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CCDC28BQ9BUN5 CPEB1-213ENST00000617462 2068 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CCDC28BQ9BUN5 RPGRIP1-202ENST00000400017 3940 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
CCDC28BQ9BUN5 CREBZF-204ENST00000527447 4037 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
CCDC28BQ9BUN5 MUC20-203ENST00000436408 2463 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
CCDC28BQ9BUN5 SLC26A6-205ENST00000395550 2589 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms