Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 GULP1-204ENST00000409637 1242 ntTSL 2 BASIC14.25□□□□□ -0.13
USP39Q53GS9 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC14.25□□□□□ -0.13
USP39Q53GS9 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC14.25□□□□□ -0.13
USP39Q53GS9 RN7SL564P-201ENST00000496309 250 ntBASIC14.25□□□□□ -0.13
USP39Q53GS9 PMFBP1-208ENST00000537792 955 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
USP39Q53GS9 C11orf97-201ENST00000542198 701 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
USP39Q53GS9 C17orf62-216ENST00000578919 841 ntAPPRIS P1 TSL 3 BASIC14.25□□□□□ -0.13
USP39Q53GS9 AP005264.5-201ENST00000590066 467 ntBASIC14.25□□□□□ -0.13
USP39Q53GS9 PEBP1P2-201ENST00000603980 558 ntBASIC14.25□□□□□ -0.13
USP39Q53GS9 HTR4-213ENST00000631296 1224 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
USP39Q53GS9 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
USP39Q53GS9 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
USP39Q53GS9 KIR2DS4-201ENST00000339924 1608 ntAPPRIS P5 TSL 1 (best) BASIC14.25□□□□□ -0.13
USP39Q53GS9 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC14.25□□□□□ -0.13
USP39Q53GS9 FAM30A-205ENST00000630242 9612 ntTSL 2 BASIC14.25□□□□□ -0.13
USP39Q53GS9 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
USP39Q53GS9 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC14.25□□□□□ -0.13
USP39Q53GS9 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
USP39Q53GS9 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
USP39Q53GS9 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
USP39Q53GS9 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC14.25□□□□□ -0.13
USP39Q53GS9 MST1P2-201ENST00000457982 2291 ntBASIC14.25□□□□□ -0.13
USP39Q53GS9 COL20A1-203ENST00000422202 8097 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
USP39Q53GS9 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC14.24□□□□□ -0.13
USP39Q53GS9 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
USP39Q53GS9 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
USP39Q53GS9 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
USP39Q53GS9 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
USP39Q53GS9 SERTAD2-201ENST00000313349 5549 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
USP39Q53GS9 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
USP39Q53GS9 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
USP39Q53GS9 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
USP39Q53GS9 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC14.24□□□□□ -0.13
USP39Q53GS9 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
USP39Q53GS9 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
USP39Q53GS9 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC14.24□□□□□ -0.13
USP39Q53GS9 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC14.24□□□□□ -0.13
USP39Q53GS9 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
USP39Q53GS9 MED11-201ENST00000293777 833 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
USP39Q53GS9 FAM3B-201ENST00000357985 1088 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
USP39Q53GS9 TPRKB-203ENST00000409716 816 ntTSL 5 BASIC14.24□□□□□ -0.13
USP39Q53GS9 AC018814.1-201ENST00000418972 357 ntTSL 3 BASIC14.24□□□□□ -0.13
USP39Q53GS9 TRPM2-AS-201ENST00000423310 586 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
USP39Q53GS9 FAM86KP-201ENST00000509817 987 ntBASIC14.24□□□□□ -0.13
USP39Q53GS9 HIST2H2BF-204ENST00000545683 999 ntTSL 2 BASIC14.24□□□□□ -0.13
USP39Q53GS9 AC016266.1-201ENST00000557558 729 ntTSL 3 BASIC14.24□□□□□ -0.13
USP39Q53GS9 AC134312.2-201ENST00000563521 608 ntTSL 2 BASIC14.24□□□□□ -0.13
USP39Q53GS9 LINC01569-203ENST00000573268 694 ntTSL 3 BASIC14.24□□□□□ -0.13
USP39Q53GS9 SNORD3B-1-201ENST00000577988 758 ntBASIC14.24□□□□□ -0.13
USP39Q53GS9 ZNF286A-212ENST00000580259 527 ntTSL 4 BASIC14.24□□□□□ -0.13
USP39Q53GS9 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC14.24□□□□□ -0.13
USP39Q53GS9 ZNF677-204ENST00000594681 935 ntTSL 2 BASIC14.24□□□□□ -0.13
USP39Q53GS9 AC003006.1-202ENST00000594684 612 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
USP39Q53GS9 AC005759.1-202ENST00000599416 415 ntTSL 3 BASIC14.24□□□□□ -0.13
USP39Q53GS9 HMGB1P24-201ENST00000611897 328 ntBASIC14.24□□□□□ -0.13
USP39Q53GS9 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC14.24□□□□□ -0.13
USP39Q53GS9 WNK1-201ENST00000315939 10452 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
USP39Q53GS9 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC14.24□□□□□ -0.13
USP39Q53GS9 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC14.24□□□□□ -0.13
USP39Q53GS9 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
USP39Q53GS9 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC14.24□□□□□ -0.13
USP39Q53GS9 LANCL3-202ENST00000378621 10298 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
USP39Q53GS9 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
USP39Q53GS9 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
USP39Q53GS9 RN7SL832P-201ENST00000607781 1756 ntBASIC14.24□□□□□ -0.13
USP39Q53GS9 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
USP39Q53GS9 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
USP39Q53GS9 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
USP39Q53GS9 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
USP39Q53GS9 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
USP39Q53GS9 PRELP-201ENST00000343110 5747 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
USP39Q53GS9 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
USP39Q53GS9 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
USP39Q53GS9 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
USP39Q53GS9 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
USP39Q53GS9 MYO16-202ENST00000356711 6874 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
USP39Q53GS9 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC14.23□□□□□ -0.13
USP39Q53GS9 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
USP39Q53GS9 AL513315.1-201ENST00000640756 1370 ntTSL 5 BASIC14.23□□□□□ -0.13
USP39Q53GS9 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC14.23□□□□□ -0.13
USP39Q53GS9 TFAM-204ENST00000487519 5414 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
USP39Q53GS9 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
USP39Q53GS9 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
USP39Q53GS9 POLL-206ENST00000370172 2308 ntTSL 2 BASIC14.23□□□□□ -0.13
USP39Q53GS9 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
USP39Q53GS9 OR4S1-201ENST00000319988 930 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
USP39Q53GS9 RNVU1-8-201ENST00000364272 125 ntBASIC14.23□□□□□ -0.13
USP39Q53GS9 C11orf49-203ENST00000378618 1166 ntTSL 5 BASIC14.23□□□□□ -0.13
USP39Q53GS9 LINC00265-2P-201ENST00000413372 782 ntBASIC14.23□□□□□ -0.13
USP39Q53GS9 BX679664.3-201ENST00000414070 555 ntBASIC14.23□□□□□ -0.13
USP39Q53GS9 CXorf40A-205ENST00000423540 1208 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
USP39Q53GS9 PPP1R2P4-201ENST00000424051 595 ntBASIC14.23□□□□□ -0.13
USP39Q53GS9 DDX39AP1-201ENST00000445147 1181 ntBASIC14.23□□□□□ -0.13
USP39Q53GS9 HMGB3-204ENST00000448905 812 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
USP39Q53GS9 AC113935.1-201ENST00000471722 555 ntBASIC14.23□□□□□ -0.13
USP39Q53GS9 POLR2J3-217ENST00000513438 546 ntTSL 3 BASIC14.23□□□□□ -0.13
USP39Q53GS9 MRPL49-209ENST00000534078 518 ntTSL 2 BASIC14.23□□□□□ -0.13
USP39Q53GS9 KRT8P2-201ENST00000556193 944 ntBASIC14.23□□□□□ -0.13
USP39Q53GS9 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC14.23□□□□□ -0.13
USP39Q53GS9 BLACE-202ENST00000616210 540 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 76.2 ms